| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaggggg | 8 | ||
| MIMAT0032893 | ppc-miR-8225-3p | 1 | ........ | 8 | 100 |
| MIMAT0017186 | mghv-miR-M1-2-5p | 1 | ........ | 8 | 100 |
| MIMAT0029335 | lja-miR7520 | 1 | _....... | 7 | 87 |
| MIMAT0028638 | mdo-miR-7319-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028020 | mmu-miR-7058-5p | 2 | ......._ | 8 | 87 |
| MIMAT0011857 | bta-miR-2328-5p | 8 | _....... | 2 | 87 |
| MIMAT0004276 | ath-miR853 | 8 | ......._ | 2 | 87 |
| MIMAT0034062 | gra-miR7494b | 1 | ......a. | 8 | 87 |
| MIMAT0027830 | mmu-miR-6965-5p | 1 | ......a. | 8 | 87 |
| MIMAT0022385 | mmu-miR-5627-5p | 1 | ......t. | 8 | 87 |
| MIMAT0018125 | pab-miR3693 | 1 | ......t. | 8 | 87 |
| MIMAT0011911 | bta-miR-2368-5p | 1 | ......t. | 8 | 87 |
| MIMAT0037155 | ata-miR9772b-3p | 1 | __...... | 6 | 75 |
| MIMAT0037107 | ata-miR9772a-3p | 1 | __...... | 6 | 75 |
| MIMAT0037053 | ssc-miR-9835-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036763 | oha-miR-181b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036220 | chi-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035024 | efu-miR-423 | 2 | _......_ | 7 | 75 |
| MIMAT0034825 | efu-miR-9242 | 7 | ......__ | 2 | 75 |
| MIMAT0031772 | hbv-miR-B14RC-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031374 | stu-miR384-3p | 1 | __...... | 6 | 75 |
| MIMAT0029358 | lja-miR7533b | 1 | _......_ | 6 | 75 |
| MIMAT0029357 | lja-miR7533a | 1 | _......_ | 6 | 75 |
| MIMAT0028737 | mdo-miR-7362-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028656 | mdo-miR-7327-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028376 | mml-miR-7205-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028350 | mml-miR-7195-5p | 3 | __...... | 8 | 75 |
| MIMAT0028294 | mml-miR-6794-5p | 2 | __...... | 7 | 75 |
| MIMAT0028071 | mmu-miR-7082-3p | 8 | __...... | 3 | 75 |
| MIMAT0028050 | mmu-miR-7072-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028046 | mmu-miR-7070-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027986 | mmu-miR-7041-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027982 | mmu-miR-7039-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027967 | mmu-miR-7031-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027945 | mmu-miR-7020-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027938 | mmu-miR-7017-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027838 | mmu-miR-6968-5p | 1 | __...... | 6 | 75 |
| MIMAT0027760 | mmu-miR-6930-5p | 2 | __...... | 7 | 75 |
| MIMAT0027754 | mmu-miR-6927-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027742 | mmu-miR-6921-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027718 | mmu-miR-6909-5p | 2 | __...... | 7 | 75 |
| MIMAT0027685 | hsa-miR-6892-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027675 | hsa-miR-6887-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027670 | hsa-miR-6885-5p | 1 | __...... | 6 | 75 |
| MIMAT0027646 | hsa-miR-6873-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027621 | hsa-miR-6769b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027570 | hsa-miR-6835-5p | 1 | __...... | 6 | 75 |
| MIMAT0027553 | hsa-miR-6826-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027510 | hsa-miR-6805-5p | 2 | __...... | 7 | 75 |
| MIMAT0027496 | hsa-miR-6798-5p | 3 | __...... | 8 | 75 |
| MIMAT0027491 | hsa-miR-6795-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027488 | hsa-miR-6794-5p | 2 | __...... | 7 | 75 |
| MIMAT0027377 | hsa-miR-6738-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027369 | hsa-miR-6734-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027365 | hsa-miR-6732-5p | 2 | __...... | 7 | 75 |
| MIMAT0025862 | blv-miR-B3-5p | 8 | __...... | 3 | 75 |
| MIMAT0025598 | gga-miR-6547-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025571 | bta-miR-6535 | 2 | __...... | 7 | 75 |
| MIMAT0025562 | bta-miR-6528 | 1 | ......__ | 6 | 75 |
| MIMAT0025302 | mja-miR-6493-3p | 1 | __...... | 6 | 75 |
| MIMAT0025071 | rno-miR-3072 | 8 | __...... | 3 | 75 |
| MIMAT0024337 | mml-miR-4716 | 2 | __...... | 7 | 75 |
| MIMAT0024152 | ggo-miR-4488 | 2 | __...... | 7 | 75 |
| MIMAT0024085 | ggo-miR-423 | 2 | _......_ | 7 | 75 |
| MIMAT0023956 | cgr-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023893 | cgr-miR-3072-3p | 8 | __...... | 3 | 75 |
| MIMAT0023683 | ame-miR-6059 | 2 | ......__ | 7 | 75 |
| MIMAT0023146 | mtr-miR5759 | 2 | __...... | 7 | 75 |
| MIMAT0022035 | aca-miR-5415 | 6 | _......_ | 1 | 75 |
| MIMAT0021314 | mtr-miR5276 | 1 | __...... | 6 | 75 |
| MIMAT0021125 | hsa-miR-5194 | 2 | _......_ | 7 | 75 |
| MIMAT0021096 | osa-miR5148c | 2 | _......_ | 7 | 75 |
| MIMAT0021095 | osa-miR5148b | 2 | _......_ | 7 | 75 |
| MIMAT0021094 | osa-miR5148a | 2 | _......_ | 7 | 75 |
| MIMAT0021043 | hsa-miR-5010-5p | 1 | __...... | 6 | 75 |
| MIMAT0020451 | bfl-miR-34c | 7 | ......__ | 2 | 75 |
| MIMAT0019886 | hsa-miR-4749-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019839 | hsa-miR-4723-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019827 | hsa-miR-4716-3p | 2 | __...... | 7 | 75 |
| MIMAT0019791 | hsa-miR-4697-5p | 1 | __...... | 6 | 75 |
| MIMAT0019700 | hsa-miR-4640-3p | 8 | __...... | 3 | 75 |
| MIMAT0019653 | pma-miR-4619 | 8 | __...... | 3 | 75 |
| MIMAT0019022 | hsa-miR-4488 | 1 | __...... | 6 | 75 |
| MIMAT0018724 | tca-miR-3840-5p | 1 | __...... | 6 | 75 |
| MIMAT0018553 | ame-miR-3776 | 3 | _......_ | 8 | 75 |
| MIMAT0016910 | hsa-miR-4278 | 3 | __...... | 8 | 75 |
| MIMAT0016865 | hsa-miR-4313 | 8 | __...... | 3 | 75 |
| MIMAT0017856 | rno-miR-3573-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016330 | ahy-miR3508 | 2 | ......__ | 7 | 75 |
| MIMAT0015882 | ppy-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015064 | hsa-miR-3184-5p | 2 | _......_ | 7 | 75 |
| MIMAT0014939 | mmu-miR-3104-5p | 2 | __...... | 7 | 75 |
| MIMAT0014853 | mmu-miR-3072-3p | 8 | __...... | 3 | 75 |
| MIMAT0014050 | osa-miR2919 | 2 | __...... | 7 | 75 |
| MIMAT0013880 | ssc-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013039 | eca-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013624 | bmo-miR-2756-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011989 | bta-miR-2422 | 3 | _......_ | 8 | 75 |
| MIMAT0011942 | bta-miR-2389 | 1 | _......_ | 6 | 75 |
| MIMAT0011856 | bta-miR-2327 | 1 | __...... | 6 | 75 |
| MIMAT0011855 | bta-miR-2326 | 7 | __...... | 2 | 75 |
| MIMAT0026921 | hsa-miR-2276-5p | 7 | ......__ | 2 | 75 |
| MIMAT0009372 | bta-miR-760-5p | 6 | _......_ | 1 | 75 |
| MIMAT0008296 | ptr-miR-642 | 8 | ......__ | 3 | 75 |
| MIMAT0007890 | hsa-miR-1914-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006742 | cfa-miR-423a | 2 | _......_ | 7 | 75 |
| MIMAT0006483 | mml-miR-642 | 8 | ......__ | 3 | 75 |
| MIMAT0006321 | mml-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007591 | gga-miR-1699 | 3 | ......__ | 8 | 75 |
| MIMAT0007472 | gga-miR-1606 | 1 | __...... | 6 | 75 |
| MIMAT0007078 | oan-miR-1421p-5p | 1 | __...... | 6 | 75 |
| MIMAT0006975 | oan-miR-1421g-5p | 1 | __...... | 6 | 75 |
| MIMAT0006874 | oan-miR-1343-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005392 | cre-miR1150.1 | 1 | ......__ | 6 | 75 |
| MIMAT0005336 | rno-miR-760-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017305 | rno-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012541 | mdv2-miR-M19-5p | 6 | _......_ | 1 | 75 |
| MIMAT0012537 | bta-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004825 | mmu-miR-423-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017245 | mmu-miR-760-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003344 | sv40-miR-S1-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003312 | hsa-miR-642a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0003294 | hsa-miR-625-5p | 1 | __...... | 6 | 75 |
| MIMAT0004748 | hsa-miR-423-5p | 2 | _......_ | 7 | 75 |
