| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agagtgag | 8 | ||
| MIMAT0027489 | hsa-miR-6794-3p | 8 | ........ | 1 | 100 |
| MIMAT0037095 | ata-miR156d-3p | 8 | _....... | 2 | 87 |
| MIMAT0035823 | bra-miR156d-3p | 8 | _....... | 2 | 87 |
| MIMAT0035819 | bra-miR156b-3p | 8 | _....... | 2 | 87 |
| MIMAT0034873 | efu-miR-9255 | 7 | ......._ | 1 | 87 |
| MIMAT0034063 | gra-miR8690 | 1 | ......._ | 7 | 87 |
| MIMAT0028735 | mdo-miR-7361-3p | 8 | ......._ | 2 | 87 |
| MIMAT0028295 | mml-miR-6794-3p | 7 | ......._ | 1 | 87 |
| MIMAT0025810 | gga-miR-6700-3p | 7 | ......._ | 1 | 87 |
| MIMAT0023068 | tur-miR-307-5p | 8 | _....... | 2 | 87 |
| MIMAT0022288 | hsa-miR-5586-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020010 | sko-miR-4818b-5p | 8 | _....... | 2 | 87 |
| MIMAT0019698 | hsa-miR-4639-3p | 7 | ......._ | 1 | 87 |
| MIMAT0015641 | mmu-miR-3470b | 7 | ......._ | 1 | 87 |
| MIMAT0017408 | aly-miR156f-3p | 8 | _....... | 2 | 87 |
| MIMAT0017404 | aly-miR156d-3p | 8 | _....... | 2 | 87 |
| MIMAT0012172 | hbv-miR-B20-5p | 1 | _....... | 7 | 87 |
| MIMAT0010136 | lmi-miR-307-5p | 8 | _....... | 2 | 87 |
| MIMAT0019129 | tca-miR-307-5p | 8 | _....... | 2 | 87 |
| MIMAT0015237 | bmo-miR-307-5p | 8 | _....... | 2 | 87 |
| MIMAT0022845 | osa-miR156b-3p | 8 | _....... | 2 | 87 |
| MIMAT0020832 | dme-miR-307a-5p | 8 | _....... | 2 | 87 |
| MIMAT0031869 | ath-miR156f-3p | 8 | _....... | 2 | 87 |
| MIMAT0031868 | ath-miR156d-3p | 8 | _....... | 2 | 87 |
| MIMAT0024271 | ggo-miR-3138 | 1 | .c...... | 8 | 87 |
| MIMAT0024047 | ptr-miR-3138 | 1 | .c...... | 8 | 87 |
| MIMAT0022041 | aca-miR-5421 | 1 | .c...... | 8 | 87 |
| MIMAT0014861 | mmu-miR-3076-3p | 8 | ......c. | 1 | 87 |
| MIMAT0037119 | ata-miR156c-3p | 7 | __...... | 2 | 75 |
| MIMAT0036761 | oha-miR-181c-3p | 6 | __...... | 1 | 75 |
| MIMAT0036363 | gma-miR9743 | 3 | ......__ | 8 | 75 |
| MIMAT0036002 | chi-miR-181b-3p | 6 | __...... | 1 | 75 |
| MIMAT0035829 | bra-miR156g-3p | 7 | __...... | 2 | 75 |
| MIMAT0035827 | bra-miR156f-3p | 8 | __...... | 3 | 75 |
| MIMAT0035821 | bra-miR156c-3p | 7 | __...... | 2 | 75 |
| MIMAT0035452 | sly-miR156d-3p | 7 | __...... | 2 | 75 |
| MIMAT0035244 | gsa-miR-279-5p | 1 | __...... | 6 | 75 |
| MIMAT0034820 | efu-miR-9223b | 2 | _......_ | 7 | 75 |
| MIMAT0034715 | eca-miR-514a | 6 | _......_ | 1 | 75 |
| MIMAT0034670 | eca-miR-483 | 6 | _......_ | 1 | 75 |
| MIMAT0034618 | eca-miR-9073 | 2 | _......_ | 7 | 75 |
| MIMAT0034514 | eca-miR-8977 | 1 | __...... | 6 | 75 |
| MIMAT0034004 | gra-miR8646 | 2 | __...... | 7 | 75 |
| MIMAT0033786 | pxy-miR-283 | 2 | ......__ | 7 | 75 |
| MIMAT0033217 | ppc-miR-8364i-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033120 | ppc-miR-8364g-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033082 | ppc-miR-8364b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033064 | ppc-miR-8364h-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033027 | ppc-miR-8364j-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032911 | ppc-miR-8364d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032841 | cel-miR-2217b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032762 | ath-miR8166 | 3 | ......__ | 8 | 75 |
| MIMAT0032424 | ssa-miR-181b-3p | 6 | __...... | 1 | 75 |
| MIMAT0031392 | mmu-miR-8091 | 3 | _......_ | 8 | 75 |
| MIMAT0031358 | stu-miR156k-3p | 7 | __...... | 2 | 75 |
| MIMAT0031356 | stu-miR156j-3p | 7 | __...... | 2 | 75 |
| MIMAT0031354 | stu-miR156i-3p | 7 | __...... | 2 | 75 |
| MIMAT0031352 | stu-miR156h-3p | 7 | __...... | 2 | 75 |
| MIMAT0031348 | stu-miR156f-3p | 6 | __...... | 1 | 75 |
| MIMAT0030825 | prd-miR-7962-3p | 8 | __...... | 3 | 75 |
| MIMAT0030339 | hhi-miR-7794 | 1 | _......_ | 6 | 75 |
| MIMAT0030078 | bdi-miR156h-3p | 7 | __...... | 2 | 75 |
| MIMAT0030074 | bdi-miR156f-3p | 7 | __...... | 2 | 75 |
| MIMAT0030072 | bdi-miR156e-3p | 7 | __...... | 2 | 75 |
| MIMAT0029842 | mmu-miR-7668-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029085 | gga-miR-7465-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028391 | mmu-miR-7211-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028342 | mml-miR-7192-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028288 | mml-miR-6790-5p | 1 | __...... | 6 | 75 |
| MIMAT0028286 | mml-miR-7174-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027935 | mmu-miR-7015-3p | 7 | __...... | 2 | 75 |
| MIMAT0027887 | mmu-miR-6992-3p | 7 | __...... | 2 | 75 |
| MIMAT0027849 | mmu-miR-6973a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027779 | mmu-miR-6939-3p | 7 | __...... | 2 | 75 |
| MIMAT0027717 | mmu-miR-6908-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027455 | hsa-miR-6777-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025780 | gga-miR-6677-5p | 6 | __...... | 1 | 75 |
| MIMAT0025672 | gga-miR-6582-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025669 | gga-miR-6581-5p | 1 | __...... | 6 | 75 |
| MIMAT0025389 | ssc-miR-2411 | 3 | _......_ | 8 | 75 |
| MIMAT0025201 | ptc-miR6468-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032137 | sma-miR-36a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025018 | hme-miR-6311-3p | 2 | __...... | 7 | 75 |
| MIMAT0024985 | hme-miR-71 | 7 | __...... | 2 | 75 |
| MIMAT0027276 | ppe-miR6260 | 3 | _......_ | 8 | 75 |
| MIMAT0024407 | ppy-miR-3174 | 2 | __...... | 7 | 75 |
| MIMAT0023800 | cgr-miR-181b-3p | 6 | __...... | 1 | 75 |
| MIMAT0023276 | osa-miR5805 | 3 | _......_ | 8 | 75 |
| MIMAT0022541 | ola-miR-181b-3p | 6 | __...... | 1 | 75 |
| MIMAT0023041 | tur-miR-71-3p | 7 | __...... | 2 | 75 |
| MIMAT0022046 | aca-miR-5426-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021292 | mtr-miR5268b | 3 | ......__ | 8 | 75 |
| MIMAT0021291 | mtr-miR5268a | 3 | ......__ | 8 | 75 |
| MIMAT0021147 | mtr-miR5213-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027069 | bdi-miR156d-3p | 7 | __...... | 2 | 75 |
| MIMAT0027057 | bdi-miR156b-3p | 7 | __...... | 2 | 75 |
| MIMAT0020507 | dme-miR-4914-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019916 | hsa-miR-4765 | 2 | _......_ | 7 | 75 |
| MIMAT0019785 | hsa-miR-4693-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018285 | gma-miR4379 | 2 | ......__ | 7 | 75 |
| MIMAT0018898 | tca-miR-3897-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018106 | hsa-miR-3680-5p | 8 | __...... | 3 | 75 |
| MIMAT0018061 | dme-miR-3644-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016611 | cin-miR-4061-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016272 | sja-miR-2162-5p | 1 | __...... | 6 | 75 |
| MIMAT0016131 | ppy-miR-921 | 3 | __...... | 8 | 75 |
| MIMAT0016095 | ppy-miR-668 | 8 | _......_ | 3 | 75 |
| MIMAT0016050 | ppy-miR-609 | 1 | ......__ | 6 | 75 |
| MIMAT0017764 | esi-miR3469-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017638 | aly-miR847-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017402 | aly-miR156c-3p | 7 | __...... | 2 | 75 |
| MIMAT0017398 | aly-miR156a-3p | 7 | __...... | 2 | 75 |
| MIMAT0015051 | hsa-miR-3174 | 2 | __...... | 7 | 75 |
| MIMAT0031044 | tgu-miR-181b-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0027003 | tgu-miR-181b-1-3p | 7 | __...... | 2 | 75 |
| MIMAT0014401 | cqu-miR-71-3p | 7 | __...... | 2 | 75 |
| MIMAT0014221 | aae-miR-71-3p | 7 | __...... | 2 | 75 |
| MIMAT0015308 | zma-miR156l-3p | 7 | __...... | 2 | 75 |
| MIMAT0012856 | rno-miR-759 | 3 | ......__ | 8 | 75 |
| MIMAT0012839 | rno-miR-668 | 8 | _......_ | 3 | 75 |
| MIMAT0012819 | ptr-miR-759 | 3 | ......__ | 8 | 75 |
| MIMAT0012795 | mml-miR-759 | 3 | ......__ | 8 | 75 |
| MIMAT0012769 | mdo-miR-759 | 3 | ......__ | 8 | 75 |
| MIMAT0012194 | dme-miR-307b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0012047 | bta-miR-2461-5p | 7 | ......__ | 2 | 75 |
| MIMAT0012003 | bta-miR-677 | 6 | __...... | 1 | 75 |
| MIMAT0011972 | bta-miR-2411-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011932 | bta-miR-2383 | 3 | _......_ | 8 | 75 |
| MIMAT0011805 | bta-miR-2297 | 6 | ......__ | 1 | 75 |
| MIMAT0011451 | cel-miR-2217a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0010024 | ppt-miR1023e-5p | 7 | ......__ | 2 | 75 |
| MIMAT0009938 | cfa-miR-759 | 3 | ......__ | 8 | 75 |
| MIMAT0009901 | cfa-miR-483 | 6 | _......_ | 1 | 75 |
| MIMAT0009165 | osa-miR1846c-5p | 1 | __...... | 6 | 75 |
| MIMAT0009327 | bta-miR-483 | 6 | _......_ | 1 | 75 |
| MIMAT0032047 | dvi-miR-279-5p | 1 | __...... | 6 | 75 |
| MIMAT0019109 | tca-miR-71-3p | 7 | __...... | 2 | 75 |
| MIMAT0008313 | ptr-miR-668 | 8 | _......_ | 3 | 75 |
| MIMAT0007790 | osa-miR1846b-5p | 1 | __...... | 6 | 75 |
| MIMAT0007788 | osa-miR1846a-5p | 1 | __...... | 6 | 75 |
| MIMAT0006504 | mml-miR-668 | 8 | _......_ | 3 | 75 |
| MIMAT0006836 | oan-miR-181b-1-3p | 6 | __...... | 1 | 75 |
| MIMAT0022720 | hsa-miR-1304-3p | 7 | __...... | 2 | 75 |
| MIMAT0022945 | hsa-miR-1236-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005559 | mcmv-miR-m108-2-5p.2 | 6 | _......_ | 1 | 75 |
| MIMAT0005275 | smo-miR1103-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005108 | ppt-miR1023d-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005106 | ppt-miR1023c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005104 | ppt-miR1023b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005102 | ppt-miR1023a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0005522 | cel-miR-1021 | 2 | __...... | 7 | 75 |
| MIMAT0004971 | hsa-miR-921 | 3 | __...... | 8 | 75 |
| MIMAT0026733 | mtr-miR156i-3p | 8 | __...... | 3 | 75 |
| MIMAT0022935 | mtr-miR398a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026725 | mtr-miR156d-3p | 8 | __...... | 3 | 75 |
| MIMAT0026723 | mtr-miR156b-3p | 8 | __...... | 3 | 75 |
| MIMAT0004278 | ath-miR847 | 6 | _......_ | 1 | 75 |
| MIMAT0015243 | bmo-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0003897 | mmu-miR-759 | 3 | ......__ | 8 | 75 |
| MIMAT0003732 | mmu-miR-668-3p | 8 | _......_ | 3 | 75 |
| MIMAT0010497 | hsa-miR-759 | 3 | ......__ | 8 | 75 |
| MIMAT0003881 | hsa-miR-668-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003120 | mmu-miR-483-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002173 | hsa-miR-483-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015131 | zma-miR156i-3p | 7 | __...... | 2 | 75 |
| MIMAT0015130 | zma-miR156h-3p | 7 | __...... | 2 | 75 |
| MIMAT0015129 | zma-miR156a-3p | 7 | __...... | 2 | 75 |
| MIMAT0015128 | zma-miR156e-3p | 7 | __...... | 2 | 75 |
| MIMAT0015126 | zma-miR156g-3p | 7 | __...... | 2 | 75 |
| MIMAT0015125 | zma-miR156f-3p | 7 | __...... | 2 | 75 |
| MIMAT0015124 | zma-miR156d-3p | 7 | __...... | 2 | 75 |
| MIMAT0031920 | dre-miR-181b-3p | 6 | __...... | 1 | 75 |
| MIMAT0022866 | osa-miR156l-3p | 7 | __...... | 2 | 75 |
| MIMAT0017140 | rno-miR-181b-2-3p | 6 | __...... | 1 | 75 |
| MIMAT0017139 | rno-miR-181b-1-3p | 6 | __...... | 1 | 75 |
| MIMAT0017084 | mmu-miR-181b-2-3p | 6 | __...... | 1 | 75 |
| MIMAT0017067 | mmu-miR-181b-1-3p | 6 | __...... | 1 | 75 |
| MIMAT0031893 | hsa-miR-181b-2-3p | 6 | __...... | 1 | 75 |
| MIMAT0031157 | osa-miR156h-3p | 7 | __...... | 2 | 75 |
| MIMAT0022848 | osa-miR156g-3p | 7 | __...... | 2 | 75 |
| MIMAT0022847 | osa-miR156f-3p | 7 | __...... | 2 | 75 |
| MIMAT0022846 | osa-miR156c-3p | 7 | __...... | 2 | 75 |
| MIMAT0022692 | hsa-miR-181b-3p | 6 | __...... | 1 | 75 |
| MIMAT0031867 | ath-miR156c-3p | 7 | __...... | 2 | 75 |
| MIMAT0031865 | ath-miR156a-3p | 7 | __...... | 2 | 75 |
