| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agatagca | 8 | ||
| MIMAT0015566 | bmo-miR-3375-3p | 8 | ........ | 1 | 100 |
| MIMAT0017188 | mghv-miR-M1-4-3p | 1 | ........ | 8 | 100 |
| MIMAT0037141 | ata-miR390-3p | 8 | ......._ | 2 | 87 |
| MIMAT0033247 | ppc-miR-8349-3p | 8 | _....... | 2 | 87 |
| MIMAT0027043 | bdi-miR390a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0017693 | aly-miR853-5p | 8 | _....... | 2 | 87 |
| MIMAT0015428 | bmo-miR-3246 | 8 | _....... | 2 | 87 |
| MIMAT0015367 | zma-miR390b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0015333 | zma-miR390a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0022888 | osa-miR390-3p | 8 | ......._ | 2 | 87 |
| MIMAT0028801 | mdo-miR-7374b-3p | 1 | ......a. | 8 | 87 |
| MIMAT0026432 | sbi-miR6228-5p | 8 | ......a. | 1 | 87 |
| MIMAT0016574 | cin-miR-4042-3p | 1 | ......g. | 8 | 87 |
| MIMAT0017734 | aly-miR3449-3p | 1 | ......a. | 8 | 87 |
| MIMAT0037256 | ata-miR9674b-5p | 8 | __...... | 3 | 75 |
| MIMAT0037204 | ata-miR9674a-5p | 1 | __...... | 6 | 75 |
| MIMAT0037195 | ata-miR9674c-3p | 8 | __...... | 3 | 75 |
| MIMAT0036898 | oha-miR-31-3p | 6 | __...... | 1 | 75 |
| MIMAT0035801 | tae-miR9674b-5p | 1 | __...... | 6 | 75 |
| MIMAT0035480 | sly-miR390b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0035468 | sly-miR390a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0035064 | efu-miR-31 | 6 | __...... | 1 | 75 |
| MIMAT0034771 | efu-miR-9191 | 6 | __...... | 1 | 75 |
| MIMAT0033790 | pxy-miR-8536b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0033784 | pxy-miR-8535-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033628 | sma-miR-8458-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033189 | ppc-miR-8364m-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033060 | ppc-miR-8364q-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033046 | ppc-miR-8364n-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032961 | ppc-miR-8248-3p | 2 | __...... | 7 | 75 |
| MIMAT0032954 | ppc-miR-8245a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032944 | ppc-miR-312b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0032768 | ath-miR8170-5p | 1 | __...... | 6 | 75 |
| MIMAT0031703 | bbe-miR-4880-5p | 8 | __...... | 3 | 75 |
| MIMAT0031344 | stu-miR390-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030459 | prd-miR-7866-3p | 1 | __...... | 6 | 75 |
| MIMAT0030204 | bdi-miR7717c-5p | 7 | __...... | 2 | 75 |
| MIMAT0029325 | lja-miR390b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0029323 | lja-miR390a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0029261 | mes-miR390 | 7 | _......_ | 2 | 75 |
| MIMAT0029084 | gga-miR-7465-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028981 | oan-miR-7416-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028469 | mdo-miR-7251-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023903 | cgr-miR-31-3p | 6 | __...... | 1 | 75 |
| MIMAT0022255 | hsa-miR-4524b-5p | 1 | __...... | 6 | 75 |
| MIMAT0022228 | mtr-miR5561-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022024 | aca-miR-5408a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021412 | osa-miR5339 | 2 | ......__ | 7 | 75 |
| MIMAT0020995 | gma-miR390c | 7 | _......_ | 2 | 75 |
| MIMAT0020463 | bfl-miR-4880 | 8 | __...... | 3 | 75 |
| MIMAT0019918 | hsa-miR-4766-3p | 1 | __...... | 6 | 75 |
| MIMAT0019732 | hsa-miR-4662a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019062 | hsa-miR-4524a-5p | 1 | __...... | 6 | 75 |
| MIMAT0016550 | cin-miR-4030-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016415 | cin-miR-367-5p | 8 | __...... | 3 | 75 |
| MIMAT0017536 | aly-miR390b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017534 | aly-miR390a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015394 | bmo-miR-3214 | 2 | ......__ | 7 | 75 |
| MIMAT0014827 | mmu-miR-3060-3p | 3 | __...... | 8 | 75 |
| MIMAT0013651 | bmo-miR-2770-5p | 2 | ......__ | 7 | 75 |
| MIMAT0012308 | dps-miR-2520 | 2 | __...... | 7 | 75 |
| MIMAT0011448 | cel-miR-2216-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007706 | gga-miR-1792 | 3 | _......_ | 8 | 75 |
| MIMAT0007510 | gga-miR-1637 | 2 | _......_ | 7 | 75 |
| MIMAT0007360 | gma-miR390a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007229 | oan-miR-1411 | 2 | ......__ | 7 | 75 |
| MIMAT0007112 | oan-miR-31-3p | 6 | __...... | 1 | 75 |
| MIMAT0007030 | oan-miR-1366 | 6 | __...... | 1 | 75 |
| MIMAT0005255 | smo-miR1099 | 2 | __...... | 7 | 75 |
| MIMAT0003714 | ebv-miR-BART16 | 3 | ......__ | 8 | 75 |
| MIMAT0022907 | ptc-miR390d-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026549 | gga-miR-31-3p | 6 | __...... | 1 | 75 |
| MIMAT0031903 | ath-miR390b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031902 | ath-miR390a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017102 | rno-miR-31a-3p | 6 | __...... | 1 | 75 |
| MIMAT0004634 | mmu-miR-31-3p | 6 | __...... | 1 | 75 |
| MIMAT0004504 | hsa-miR-31-3p | 6 | __...... | 1 | 75 |
