| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agatccc | 7 | ||
| MIMAT0032445 | ssa-miR-193-5p | 8 | ....... | 2 | 100 |
| MIMAT0029678 | cbn-miR-7635 | 8 | ....... | 2 | 100 |
| MIMAT0029133 | ghr-miR7491 | 8 | ....... | 2 | 100 |
| MIMAT0028335 | mml-miR-769-3p | 8 | ....... | 2 | 100 |
| MIMAT0020177 | dme-miR-4958-5p | 7 | ....... | 1 | 100 |
| MIMAT0003927 | mdv1-miR-M6-3p | 2 | ....... | 8 | 100 |
| MIMAT0037071 | ssc-miR-9852-3p | 7 | _...... | 2 | 85 |
| MIMAT0034666 | eca-miR-9117 | 8 | _...... | 3 | 85 |
| MIMAT0034400 | cfa-miR-769 | 8 | _...... | 3 | 85 |
| MIMAT0033985 | gra-miR8635 | 8 | ......_ | 3 | 85 |
| MIMAT0033547 | sma-miR-8421-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033428 | str-miR-8384-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032926 | ppc-miR-8236-5p | 6 | _...... | 1 | 85 |
| MIMAT0032774 | ath-miR8175 | 1 | _...... | 6 | 85 |
| MIMAT0030774 | prd-miR-7951-5p | 2 | _...... | 7 | 85 |
| MIMAT0030726 | prd-miR-7935-5p | 3 | _...... | 8 | 85 |
| MIMAT0030560 | prd-miR-58-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030520 | prd-miR-7881-5p | 2 | _...... | 7 | 85 |
| MIMAT0029616 | crm-miR-7599 | 7 | _...... | 2 | 85 |
| MIMAT0028299 | mml-miR-7177-3p | 3 | _...... | 8 | 85 |
| MIMAT0028192 | dev-miR-D18-5p | 6 | _...... | 1 | 85 |
| MIMAT0028098 | ddi-miR-7095-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027633 | hsa-miR-6866-3p | 1 | _...... | 6 | 85 |
| MIMAT0025682 | gga-miR-6590-5p | 7 | _...... | 2 | 85 |
| MIMAT0025108 | mmu-miR-6364 | 3 | _...... | 8 | 85 |
| MIMAT0024497 | mse-miR-450 | 6 | _...... | 1 | 85 |
| MIMAT0023427 | hco-miR-5935 | 7 | _...... | 2 | 85 |
| MIMAT0023152 | mtr-miR5206b | 8 | _...... | 3 | 85 |
| MIMAT0021342 | mtr-miR5284h | 8 | _...... | 3 | 85 |
| MIMAT0021336 | mtr-miR5284b | 8 | _...... | 3 | 85 |
| MIMAT0021137 | mtr-miR5206a | 8 | _...... | 3 | 85 |
| MIMAT0020138 | cel-miR-4932 | 7 | _...... | 2 | 85 |
| MIMAT0019821 | hsa-miR-4713-3p | 7 | _...... | 2 | 85 |
| MIMAT0018216 | hvu-miR168-3p | 1 | _...... | 6 | 85 |
| MIMAT0016580 | cin-miR-4045-3p | 7 | _...... | 2 | 85 |
| MIMAT0016076 | ppy-miR-638 | 7 | _...... | 2 | 85 |
| MIMAT0015895 | ppy-miR-450b-3p | 8 | _...... | 3 | 85 |
| MIMAT0015642 | mmu-miR-3471 | 3 | ......_ | 8 | 85 |
| MIMAT0013958 | ssc-miR-769-3p | 8 | _...... | 3 | 85 |
| MIMAT0013016 | eca-miR-769a-3p | 8 | _...... | 3 | 85 |
| MIMAT0012377 | dps-miR-2557-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020913 | dme-miR-2492-5p | 8 | _...... | 3 | 85 |
| MIMAT0012061 | bta-miR-2471-5p | 8 | ......_ | 3 | 85 |
| MIMAT0008152 | ptr-miR-450b | 8 | _...... | 3 | 85 |
| MIMAT0006480 | mml-miR-638 | 7 | _...... | 2 | 85 |
| MIMAT0006334 | mml-miR-450b-3p | 8 | _...... | 3 | 85 |
| MIMAT0004910 | hsa-miR-450b-3p | 8 | _...... | 3 | 85 |
| MIMAT0004272 | ath-miR850 | 3 | ......_ | 8 | 85 |
| MIMAT0003887 | hsa-miR-769-3p | 8 | _...... | 3 | 85 |
| MIMAT0003415 | ebv-miR-BART6-3p | 8 | _...... | 3 | 85 |
| MIMAT0003308 | hsa-miR-638 | 7 | _...... | 2 | 85 |
| MIMAT0002187 | kshv-miR-K12-7-3p | 2 | _...... | 7 | 85 |
| MIMAT0015122 | osa-miR168a-3p | 1 | _...... | 6 | 85 |
