| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agatgcc | 7 | ||
| MIMAT0027352 | cln-miR6725 | 8 | ....... | 2 | 100 |
| MIMAT0017575 | aly-miR399c-5p | 8 | ....... | 2 | 100 |
| MIMAT0012282 | dps-miR-3983 | 1 | ....... | 7 | 100 |
| MIMAT0012540 | mdv2-miR-M16-3p | 1 | ....... | 7 | 100 |
| MIMAT0003457 | mmu-miR-680 | 8 | ....... | 2 | 100 |
| MIMAT0031913 | ath-miR399c-5p | 8 | ....... | 2 | 100 |
| MIMAT0037222 | ata-miR172c-5p | 8 | _...... | 3 | 85 |
| MIMAT0036547 | tch-miR-9771h | 1 | ......_ | 6 | 85 |
| MIMAT0035023 | efu-miR-9318b | 8 | _...... | 3 | 85 |
| MIMAT0034882 | efu-miR-9262 | 1 | _...... | 6 | 85 |
| MIMAT0033360 | str-miR-8370-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030214 | bdi-miR7739-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028632 | mdo-miR-7316-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028156 | ssc-miR-7140-3p | 3 | _...... | 8 | 85 |
| MIMAT0025082 | mmu-miR-6339 | 1 | _...... | 6 | 85 |
| MIMAT0019809 | hsa-miR-4708-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019702 | hsa-miR-4642 | 8 | _...... | 3 | 85 |
| MIMAT0018141 | pab-miR3709a | 3 | ......_ | 8 | 85 |
| MIMAT0017902 | rno-miR-741-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017610 | aly-miR828-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017521 | aly-miR172a-5p | 8 | _...... | 3 | 85 |
| MIMAT0015622 | bmo-miR-3415 | 1 | _...... | 6 | 85 |
| MIMAT0015324 | zma-miR169m-3p | 6 | _...... | 1 | 85 |
| MIMAT0013260 | mtr-miR2589 | 6 | _...... | 1 | 85 |
| MIMAT0012287 | dps-miR-2503 | 3 | _...... | 8 | 85 |
| MIMAT0007545 | gga-miR-1663-3p | 7 | _...... | 2 | 85 |
| MIMAT0007418 | gga-miR-1560-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006861 | oan-miR-1339-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004468 | mdv2-miR-M24-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026645 | gga-miR-456-5p | 8 | _...... | 3 | 85 |
| MIMAT0022918 | ptc-miR477a-3p | 2 | _...... | 7 | 85 |
