| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agcaccg | 7 | ||
| MIMAT0024334 | mml-miR-1250 | 8 | ....... | 2 | 100 |
| MIMAT0024235 | ggo-miR-1250 | 8 | ....... | 2 | 100 |
| MIMAT0016175 | ppy-miR-1250 | 8 | ....... | 2 | 100 |
| MIMAT0017369 | rno-miR-667-5p | 7 | ....... | 1 | 100 |
| MIMAT0007976 | ptr-miR-1250 | 8 | ....... | 2 | 100 |
| MIMAT0005902 | hsa-miR-1250-5p | 8 | ....... | 2 | 100 |
| MIMAT0017239 | mmu-miR-667-5p | 7 | ....... | 1 | 100 |
| MIMAT0003435 | rlcv-miR-rL1-6-3p | 2 | ....... | 8 | 100 |
| MIMAT0003390 | ebv-miR-BART1-3p | 2 | ....... | 8 | 100 |
| MIMAT0037256 | ata-miR9674b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0037195 | ata-miR9674c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0037148 | ata-miR172b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035447 | sly-miR9471a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035441 | sly-miR9471b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035176 | efu-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0035175 | efu-miR-29b | 3 | ......_ | 8 | 85 |
| MIMAT0034952 | efu-miR-9292 | 1 | ......_ | 6 | 85 |
| MIMAT0034941 | efu-miR-29c | 3 | ......_ | 8 | 85 |
| MIMAT0034679 | eca-miR-9128 | 8 | ......_ | 3 | 85 |
| MIMAT0034658 | eca-miR-3065 | 3 | ......_ | 8 | 85 |
| MIMAT0034614 | eca-miR-9069 | 8 | _...... | 3 | 85 |
| MIMAT0033774 | pxy-miR-8531 | 6 | _...... | 1 | 85 |
| MIMAT0032779 | ath-miR8180 | 8 | _...... | 3 | 85 |
| MIMAT0031647 | bbe-miR-216-3p | 8 | _...... | 3 | 85 |
| MIMAT0031286 | stu-miR172b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029861 | mmu-miR-7676-3p | 8 | _...... | 3 | 85 |
| MIMAT0029843 | mmu-miR-7668-3p | 6 | _...... | 1 | 85 |
| MIMAT0029096 | gga-miR-7471-5p | 8 | _...... | 3 | 85 |
| MIMAT0027833 | mmu-miR-3547-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027819 | mmu-miR-6959-3p | 3 | _...... | 8 | 85 |
| MIMAT0027759 | mmu-miR-6929-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025609 | gga-miR-6551-5p | 6 | _...... | 1 | 85 |
| MIMAT0025296 | mja-miR-6489-5p | 2 | _...... | 7 | 85 |
| MIMAT0022570 | ola-miR-29a | 1 | ......_ | 6 | 85 |
| MIMAT0022470 | hsa-miR-5682 | 3 | ......_ | 8 | 85 |
| MIMAT0021656 | gma-miR172g | 3 | ......_ | 8 | 85 |
| MIMAT0027061 | bdi-miR172a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021104 | osa-miR5154 | 1 | ......_ | 6 | 85 |
| MIMAT0021068 | gma-miR169i-3p | 7 | _...... | 2 | 85 |
| MIMAT0019881 | hsa-miR-4746-3p | 8 | _...... | 3 | 85 |
| MIMAT0018690 | tca-miR-3830-5p | 8 | _...... | 3 | 85 |
| MIMAT0018085 | hsa-miR-3663-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017840 | rno-miR-3065-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017802 | rno-miR-3547 | 3 | ......_ | 8 | 85 |
| MIMAT0017529 | aly-miR172e-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017523 | aly-miR172b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015378 | hsa-miR-3065-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014837 | mmu-miR-3065-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013870 | ssc-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0013243 | eca-miR-764-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013174 | eca-miR-770-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012854 | rno-miR-764-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012818 | ptr-miR-764 | 6 | ......_ | 1 | 85 |
| MIMAT0012794 | mml-miR-764 | 6 | ......_ | 1 | 85 |
| MIMAT0011289 | dre-miR-2185-5p | 6 | _...... | 1 | 85 |
| MIMAT0010167 | bra-miR172b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009948 | bta-miR-764 | 6 | ......_ | 1 | 85 |
| MIMAT0009937 | cfa-miR-764 | 6 | ......_ | 1 | 85 |
| MIMAT0019150 | bfl-miR-216-3p | 8 | _...... | 3 | 85 |
| MIMAT0009472 | bfl-miR-29b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007639 | gga-miR-1736-3p | 1 | ......_ | 6 | 85 |
| MIMAT0005338 | rno-miR-770-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005264 | smo-miR1107 | 6 | ......_ | 1 | 85 |
| MIMAT0003518 | bta-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0003894 | mmu-miR-764-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004822 | mmu-miR-770-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003442 | rlcv-miR-rL1-12-3p | 8 | _...... | 3 | 85 |
| MIMAT0002368 | mne-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0002367 | lla-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0002366 | sla-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0002365 | mml-miR-29a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0002364 | ptr-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0002363 | ppy-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0002362 | ppa-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0002361 | age-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0002360 | ggo-miR-29a | 3 | ......_ | 8 | 85 |
| MIMAT0015214 | kshv-miR-K12-1-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022906 | ptc-miR172h-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022885 | osa-miR172d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031918 | ath-miR172e-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000204 | ath-miR172b-5p | 3 | ......_ | 8 | 85 |
