| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agcgaacc | 8 | ||
| MIMAT0017187 | mghv-miR-M1-3-5p | 1 | ........ | 8 | 100 |
| MIMAT0030299 | bdi-miR7774-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028200 | dev-miR-D23-3p | 2 | _....... | 8 | 87 |
| MIMAT0007489 | gga-miR-1621-3p | 7 | _....... | 1 | 87 |
| MIMAT0034487 | eca-miR-329b | 1 | .a...... | 8 | 87 |
| MIMAT0035610 | dvi-miR-996-5p | 2 | _......_ | 7 | 75 |
| MIMAT0034915 | efu-miR-9277 | 6 | __...... | 1 | 75 |
| MIMAT0032400 | ssa-miR-15c-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0031846 | cpa-miR8149 | 1 | ......__ | 6 | 75 |
| MIMAT0031388 | aly-miR173b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030915 | stu-miR8018 | 2 | __...... | 7 | 75 |
| MIMAT0029793 | mmu-miR-6546-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022339 | cin-miR-5606-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021566 | asu-miR-5353-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020574 | osa-miR5077 | 6 | _......_ | 1 | 75 |
| MIMAT0020219 | dme-miR-4984-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017789 | esi-miR3468-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017724 | aly-miR3445-5p.1 | 1 | __...... | 6 | 75 |
| MIMAT0017531 | aly-miR173a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014701 | hsv2-miR-H19 | 6 | ......__ | 1 | 75 |
| MIMAT0013328 | mtr-miR2614 | 7 | __...... | 2 | 75 |
| MIMAT0011449 | cel-miR-1832b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011275 | sme-miR-2174 | 8 | ......__ | 3 | 75 |
| MIMAT0011233 | sme-miR-2152 | 7 | __...... | 2 | 75 |
| MIMAT0015282 | dsi-miR-312-5p | 7 | __...... | 2 | 75 |
| MIMAT0006771 | cel-miR-1829c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007561 | gga-miR-1676-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005677 | vvi-miR169y | 2 | ......__ | 7 | 75 |
| MIMAT0020895 | dme-miR-996-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017209 | mmu-miR-541-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001324 | ath-miR416 | 6 | __...... | 1 | 75 |
| MIMAT0000639 | osa-miR166e-3p | 2 | __...... | 7 | 75 |
| MIMAT0020838 | dme-miR-312-5p | 7 | __...... | 2 | 75 |
| MIMAT0000206 | ath-miR173-5p | 6 | ......__ | 1 | 75 |
