| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agcgacgt | 8 | ||
| MIMAT0005554 | mcmv-miR-M95-1-3p | 1 | ........ | 8 | 100 |
| MIMAT0037285 | ame-miR-9881 | 8 | _....... | 2 | 87 |
| MIMAT0034323 | cfa-miR-8830 | 8 | ......._ | 2 | 87 |
| MIMAT0033169 | ppc-miR-8316-5p | 2 | _....... | 8 | 87 |
| MIMAT0021684 | sbi-miR5386 | 7 | ......._ | 1 | 87 |
| MIMAT0019634 | pma-miR-4600 | 8 | _....... | 2 | 87 |
| MIMAT0019621 | pma-miR-4588 | 7 | ......._ | 1 | 87 |
| MIMAT0015470 | bmo-miR-3284 | 8 | _....... | 2 | 87 |
| MIMAT0021402 | rmi-miR-5329 | 1 | ......t. | 8 | 87 |
| MIMAT0034594 | eca-miR-9050 | 1 | ......__ | 6 | 75 |
| MIMAT0030596 | prd-miR-7966a-5p | 7 | __...... | 2 | 75 |
| MIMAT0026444 | sbi-miR6232a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025793 | gga-miR-6687-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031173 | ppe-miR398a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024857 | mmu-miR-6236 | 8 | _......_ | 3 | 75 |
| MIMAT0024794 | hbr-miR398 | 3 | ......__ | 8 | 75 |
| MIMAT0024737 | nta-miR6148a | 7 | __...... | 2 | 75 |
| MIMAT0023281 | osa-miR5809 | 7 | _......_ | 2 | 75 |
| MIMAT0022746 | xtr-miR-449b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0020576 | bdi-miR5067 | 3 | ......__ | 8 | 75 |
| MIMAT0019750 | hsa-miR-4670-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018649 | tca-miR-3813-3p | 7 | __...... | 2 | 75 |
| MIMAT0016738 | cin-miR-4140-5p | 6 | __...... | 1 | 75 |
| MIMAT0014660 | bmo-miR-2999 | 3 | _......_ | 8 | 75 |
| MIMAT0013850 | bta-miR-2892 | 2 | _......_ | 7 | 75 |
| MIMAT0013743 | bmo-miR-2830 | 1 | ......__ | 6 | 75 |
| MIMAT0013636 | bmo-miR-2762 | 8 | __...... | 3 | 75 |
| MIMAT0013582 | cte-miR-2713 | 8 | _......_ | 3 | 75 |
| MIMAT0013347 | mtr-miR2626 | 7 | __...... | 2 | 75 |
| MIMAT0007949 | ptr-miR-1181 | 7 | _......_ | 2 | 75 |
| MIMAT0007507 | gga-miR-1634 | 2 | _......_ | 7 | 75 |
| MIMAT0005826 | hsa-miR-1181 | 7 | _......_ | 2 | 75 |
| MIMAT0017301 | rno-miR-375-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022912 | ptc-miR398c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017078 | mmu-miR-375-5p | 1 | _......_ | 6 | 75 |
