| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agcgttc | 7 | ||
| MIMAT0018729 | tca-miR-3842-3p | 7 | ....... | 1 | 100 |
| MIMAT0014697 | hsv2-miR-H11-5p | 2 | ....... | 8 | 100 |
| MIMAT0036415 | ggo-miR-523-3p | 6 | _...... | 1 | 85 |
| MIMAT0034721 | eca-miR-9145 | 3 | ......_ | 8 | 85 |
| MIMAT0034467 | eca-miR-8938 | 3 | _...... | 8 | 85 |
| MIMAT0033811 | pxy-miR-8544-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030960 | stu-miR7122-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030844 | prd-miR-7971-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029798 | mmu-miR-7648-5p | 3 | _...... | 8 | 85 |
| MIMAT0028736 | mdo-miR-7362-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018589 | ame-miR-3723 | 3 | ......_ | 8 | 85 |
| MIMAT0016623 | cin-miR-4067-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016055 | ppy-miR-614 | 6 | _...... | 1 | 85 |
| MIMAT0015979 | ppy-miR-523 | 6 | _...... | 1 | 85 |
| MIMAT0017624 | aly-miR839-3p | 6 | _...... | 1 | 85 |
| MIMAT0017564 | aly-miR397b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011951 | bta-miR-2397-5p | 2 | _...... | 7 | 85 |
| MIMAT0009709 | cte-miR-1998 | 8 | _...... | 3 | 85 |
| MIMAT0008276 | ptr-miR-614 | 6 | _...... | 1 | 85 |
| MIMAT0008207 | ptr-miR-523 | 6 | _...... | 1 | 85 |
| MIMAT0005150 | ppt-miR1040 | 7 | _...... | 2 | 85 |
| MIMAT0003282 | hsa-miR-614 | 6 | _...... | 1 | 85 |
| MIMAT0002840 | hsa-miR-523-3p | 6 | _...... | 1 | 85 |
