| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggagggg | 8 | ||
| MIMAT0031772 | hbv-miR-B14RC-3p | 1 | ........ | 8 | 100 |
| MIMAT0018553 | ame-miR-3776 | 1 | ........ | 8 | 100 |
| MIMAT0028656 | mdo-miR-7327-5p | 1 | _....... | 7 | 87 |
| MIMAT0027675 | hsa-miR-6887-3p | 8 | _....... | 2 | 87 |
| MIMAT0027494 | hsa-miR-6797-5p | 1 | ......._ | 7 | 87 |
| MIMAT0025598 | gga-miR-6547-3p | 8 | _....... | 2 | 87 |
| MIMAT0019938 | hsa-miR-4779 | 2 | ......._ | 8 | 87 |
| MIMAT0019744 | hsa-miR-4667-3p | 8 | ......._ | 2 | 87 |
| MIMAT0007890 | hsa-miR-1914-3p | 1 | _....... | 7 | 87 |
| MIMAT0007244 | oan-miR-1421y-5p | 1 | ......._ | 7 | 87 |
| MIMAT0032029 | hsa-miR-1249-5p | 1 | ......._ | 7 | 87 |
| MIMAT0014804 | mmu-miR-1249-5p | 1 | ......._ | 7 | 87 |
| MIMAT0034095 | gra-miR8708 | 1 | ......a. | 8 | 87 |
| MIMAT0027602 | hsa-miR-6851-5p | 1 | ......t. | 8 | 87 |
| MIMAT0021252 | mtr-miR5254 | 1 | ......t. | 8 | 87 |
| MIMAT0018905 | tca-miR-3900-3p | 1 | ......t. | 8 | 87 |
| MIMAT0017965 | ssc-miR-1224 | 8 | ......t. | 1 | 87 |
| MIMAT0037038 | ssc-miR-9820-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036220 | chi-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0035268 | gsa-miR-281-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035178 | efu-miR-1343 | 6 | ......__ | 1 | 75 |
| MIMAT0035024 | efu-miR-423 | 2 | __...... | 7 | 75 |
| MIMAT0034476 | eca-miR-8947 | 3 | ......__ | 8 | 75 |
| MIMAT0034319 | cfa-miR-8827 | 7 | ......__ | 2 | 75 |
| MIMAT0034070 | gra-miR7504h | 1 | ......__ | 6 | 75 |
| MIMAT0034069 | gra-miR7504g | 1 | ......__ | 6 | 75 |
| MIMAT0032893 | ppc-miR-8225-3p | 2 | __...... | 7 | 75 |
| MIMAT0031403 | mmu-miR-8100 | 1 | ......__ | 6 | 75 |
| MIMAT0030867 | stu-miR7991c | 1 | ......__ | 6 | 75 |
| MIMAT0030866 | stu-miR7991b | 1 | ......__ | 6 | 75 |
| MIMAT0030865 | stu-miR7991a | 1 | ......__ | 6 | 75 |
| MIMAT0030105 | bdi-miR5174d-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030103 | bdi-miR5174c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0029358 | lja-miR7533b | 1 | __...... | 6 | 75 |
| MIMAT0029357 | lja-miR7533a | 1 | __...... | 6 | 75 |
| MIMAT0029335 | lja-miR7520 | 1 | __...... | 6 | 75 |
| MIMAT0029159 | ghr-miR7504b | 1 | ......__ | 6 | 75 |
| MIMAT0028972 | oan-miR-1421an-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028748 | mdo-miR-7366-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028638 | mdo-miR-7319-5p | 6 | __...... | 1 | 75 |
| MIMAT0028438 | mmu-miR-7235-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028376 | mml-miR-7205-5p | 3 | __...... | 8 | 75 |
| MIMAT0028219 | hsa-miR-7154-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026375 | bma-miR-5876 | 3 | ......__ | 8 | 75 |
| MIMAT0028068 | mmu-miR-7081-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028050 | mmu-miR-7072-5p | 1 | __...... | 6 | 75 |
| MIMAT0028046 | mmu-miR-7070-5p | 3 | __...... | 8 | 75 |
| MIMAT0028020 | mmu-miR-7058-5p | 3 | __...... | 8 | 75 |
| MIMAT0027945 | mmu-miR-7020-3p | 8 | __...... | 3 | 75 |
| MIMAT0027926 | mmu-miR-7011-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027784 | mmu-miR-6942-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027754 | mmu-miR-6927-5p | 3 | __...... | 8 | 75 |
| MIMAT0027742 | mmu-miR-6921-5p | 2 | __...... | 7 | 75 |
| MIMAT0027732 | mmu-miR-6916-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027688 | hsa-miR-6894-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027682 | hsa-miR-6891-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027666 | hsa-miR-6883-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027559 | hsa-miR-6829-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027553 | hsa-miR-6826-3p | 8 | __...... | 3 | 75 |
| MIMAT0027491 | hsa-miR-6795-3p | 7 | __...... | 2 | 75 |
| MIMAT0027483 | hsa-miR-6791-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027470 | hsa-miR-6785-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027377 | hsa-miR-6738-5p | 2 | __...... | 7 | 75 |
| MIMAT0027369 | hsa-miR-6734-5p | 3 | __...... | 8 | 75 |
| MIMAT0025827 | gga-miR-6543-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025486 | hsa-miR-6515-5p | 3 | _......_ | 8 | 75 |
| MIMAT0024395 | ppy-miR-3173 | 2 | ......__ | 7 | 75 |
| MIMAT0024331 | mml-miR-3173 | 3 | ......__ | 8 | 75 |
| MIMAT0024275 | ggo-miR-3173 | 3 | ......__ | 8 | 75 |
| MIMAT0024258 | ggo-miR-3612 | 1 | ......__ | 6 | 75 |
| MIMAT0024085 | ggo-miR-423 | 2 | __...... | 7 | 75 |
| MIMAT0024034 | ptr-miR-3173 | 3 | ......__ | 8 | 75 |
| MIMAT0023956 | cgr-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0023435 | hco-miR-5940 | 1 | _......_ | 6 | 75 |
| MIMAT0023308 | osa-miR5833 | 7 | ......__ | 2 | 75 |
| MIMAT0023279 | osa-miR5807 | 1 | ......__ | 6 | 75 |
| MIMAT0022369 | mmu-miR-5621-5p | 1 | ......__ | 6 | 75 |
| MIMAT0022157 | osa-miR5523 | 3 | ......__ | 8 | 75 |
| MIMAT0022062 | aca-miR-5440 | 3 | ......__ | 8 | 75 |
| MIMAT0022035 | aca-miR-5415 | 6 | __...... | 1 | 75 |
| MIMAT0021296 | mtr-miR5270b | 2 | ......__ | 7 | 75 |
| MIMAT0021295 | mtr-miR5270a | 2 | ......__ | 7 | 75 |
| MIMAT0021218 | mtr-miR5233 | 2 | ......__ | 7 | 75 |
| MIMAT0021150 | mtr-miR5215 | 1 | ......__ | 6 | 75 |
| MIMAT0021142 | mtr-miR5209 | 3 | ......__ | 8 | 75 |
| MIMAT0021125 | hsa-miR-5194 | 2 | __...... | 7 | 75 |
| MIMAT0021124 | hsa-miR-5193 | 7 | ......__ | 2 | 75 |
| MIMAT0021096 | osa-miR5148c | 2 | __...... | 7 | 75 |
| MIMAT0021095 | osa-miR5148b | 2 | __...... | 7 | 75 |
| MIMAT0021094 | osa-miR5148a | 2 | __...... | 7 | 75 |
| MIMAT0020618 | mmu-miR-5110 | 3 | ......__ | 8 | 75 |
| MIMAT0019886 | hsa-miR-4749-3p | 8 | __...... | 3 | 75 |
| MIMAT0019849 | hsa-miR-4728-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019788 | hsa-miR-4695-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019645 | pma-miR-4611 | 2 | _......_ | 7 | 75 |
| MIMAT0018981 | hsa-miR-4459 | 3 | ......__ | 8 | 75 |
| MIMAT0018728 | tca-miR-3842-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032110 | hsa-miR-3653-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017989 | hsa-miR-3612 | 1 | ......__ | 6 | 75 |
| MIMAT0016921 | hsa-miR-4290 | 8 | _......_ | 3 | 75 |
| MIMAT0016892 | hsa-miR-4266 | 3 | ......__ | 8 | 75 |
| MIMAT0017856 | rno-miR-3573-5p | 2 | __...... | 7 | 75 |
| MIMAT0017795 | rno-miR-3541 | 7 | _......_ | 2 | 75 |
| MIMAT0016083 | ppy-miR-650 | 1 | ......__ | 6 | 75 |
| MIMAT0015882 | ppy-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0015597 | bmo-miR-3393 | 2 | ......__ | 7 | 75 |
| MIMAT0015064 | hsa-miR-3184-5p | 2 | __...... | 7 | 75 |
| MIMAT0015048 | hsa-miR-3173-3p | 3 | ......__ | 8 | 75 |
| MIMAT0014937 | mmu-miR-3103-5p | 1 | _......_ | 6 | 75 |
| MIMAT0014694 | hsv1-miR-H16 | 3 | ......__ | 8 | 75 |
| MIMAT0013880 | ssc-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0013244 | eca-miR-764-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013039 | eca-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0017370 | rno-miR-764-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013624 | bmo-miR-2756-3p | 6 | __...... | 1 | 75 |
| MIMAT0011989 | bta-miR-2422 | 3 | __...... | 8 | 75 |
| MIMAT0011942 | bta-miR-2389 | 1 | __...... | 6 | 75 |
| MIMAT0011857 | bta-miR-2328-5p | 8 | __...... | 3 | 75 |
| MIMAT0011203 | gga-miR-2127 | 3 | _......_ | 8 | 75 |
| MIMAT0009451 | hsa-miR-1976 | 6 | ......__ | 1 | 75 |
| MIMAT0009372 | bta-miR-760-5p | 6 | __...... | 1 | 75 |
| MIMAT0008301 | ptr-miR-650 | 1 | ......__ | 6 | 75 |
| MIMAT0006742 | cfa-miR-423a | 2 | __...... | 7 | 75 |
| MIMAT0026907 | mml-miR-660-3p | 7 | ......__ | 2 | 75 |
| MIMAT0006490 | mml-miR-650c | 1 | ......__ | 6 | 75 |
| MIMAT0006489 | mml-miR-650b | 1 | ......__ | 6 | 75 |
| MIMAT0006488 | mml-miR-650a | 1 | ......__ | 6 | 75 |
| MIMAT0026894 | mml-miR-518c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006321 | mml-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0007667 | gga-miR-1760 | 8 | ......__ | 3 | 75 |
| MIMAT0026783 | gga-miR-1759-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007566 | gga-miR-1680-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007477 | gga-miR-1611 | 1 | _......_ | 6 | 75 |
| MIMAT0007465 | gga-miR-1599 | 1 | _......_ | 6 | 75 |
| MIMAT0007435 | gga-miR-1574-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007348 | hsa-miR-1470 | 7 | _......_ | 2 | 75 |
| MIMAT0007313 | oan-miR-1421am | 1 | ......__ | 6 | 75 |
| MIMAT0007307 | oan-miR-1421aj-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007303 | oan-miR-1421ah-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007257 | oan-miR-1421ac-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007182 | oan-miR-802-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006979 | oan-miR-1421i-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006874 | oan-miR-1343-5p | 1 | __...... | 6 | 75 |
| MIMAT0005336 | rno-miR-760-5p | 6 | __...... | 1 | 75 |
| MIMAT0017305 | rno-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0004469 | mdv2-miR-M25-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004463 | mdv2-miR-M21-5p | 7 | ......__ | 2 | 75 |
| MIMAT0012541 | mdv2-miR-M19-5p | 6 | __...... | 1 | 75 |
| MIMAT0004276 | ath-miR853 | 7 | __...... | 2 | 75 |
| MIMAT0012537 | bta-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0003900 | ppt-miR1211-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004825 | mmu-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0017245 | mmu-miR-760-5p | 6 | __...... | 1 | 75 |
| MIMAT0003895 | mmu-miR-764-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022714 | hsa-miR-766-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003344 | sv40-miR-S1-5p | 2 | __...... | 7 | 75 |
| MIMAT0022711 | hsa-miR-660-3p | 7 | ......__ | 2 | 75 |
| MIMAT0003320 | hsa-miR-650 | 1 | ......__ | 6 | 75 |
| MIMAT0017186 | mghv-miR-M1-2-5p | 2 | __...... | 7 | 75 |
| MIMAT0004748 | hsa-miR-423-5p | 2 | __...... | 7 | 75 |
| MIMAT0004609 | hsa-miR-149-3p | 3 | _......_ | 8 | 75 |
