| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggatct | 7 | ||
| MIMAT0012061 | bta-miR-2471-5p | 2 | ....... | 8 | 100 |
| MIMAT0033985 | gra-miR8635 | 3 | _...... | 8 | 85 |
| MIMAT0033547 | sma-miR-8421-3p | 1 | _...... | 6 | 85 |
| MIMAT0033428 | str-miR-8384-5p | 3 | _...... | 8 | 85 |
| MIMAT0032784 | sja-miR-8185 | 1 | ......_ | 6 | 85 |
| MIMAT0032445 | ssa-miR-193-5p | 3 | _...... | 8 | 85 |
| MIMAT0030560 | prd-miR-58-5p | 3 | _...... | 8 | 85 |
| MIMAT0029678 | cbn-miR-7635 | 3 | _...... | 8 | 85 |
| MIMAT0029133 | ghr-miR7491 | 3 | _...... | 8 | 85 |
| MIMAT0028335 | mml-miR-769-3p | 3 | _...... | 8 | 85 |
| MIMAT0028324 | mml-miR-7185-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028098 | ddi-miR-7095-3p | 1 | _...... | 6 | 85 |
| MIMAT0027815 | mmu-miR-6957-3p | 2 | _...... | 7 | 85 |
| MIMAT0020252 | egr-miR-4991 | 6 | ......_ | 1 | 85 |
| MIMAT0020177 | dme-miR-4958-5p | 2 | _...... | 7 | 85 |
| MIMAT0019546 | pma-miR-429-5p | 6 | ......_ | 1 | 85 |
| MIMAT0018581 | ame-miR-3796 | 6 | ......_ | 1 | 85 |
| MIMAT0015642 | mmu-miR-3471 | 8 | _...... | 3 | 85 |
| MIMAT0015630 | bmo-miR-3422 | 2 | _...... | 7 | 85 |
| MIMAT0014310 | aae-miR-263b-3p | 2 | _...... | 7 | 85 |
| MIMAT0012377 | dps-miR-2557-3p | 8 | _...... | 3 | 85 |
| MIMAT0009440 | mmu-miR-1967 | 3 | ......_ | 8 | 85 |
| MIMAT0007611 | gga-miR-1715-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007483 | gga-miR-1616 | 8 | ......_ | 3 | 85 |
| MIMAT0026771 | mdo-miR-1547-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005174 | ppt-miR1056 | 2 | _...... | 7 | 85 |
| MIMAT0004272 | ath-miR850 | 8 | _...... | 3 | 85 |
| MIMAT0003927 | mdv1-miR-M6-3p | 7 | _...... | 2 | 85 |
