| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggccctc | 8 | ||
| MIMAT0009209 | mdv1-miR-M12-5p | 1 | ........ | 8 | 100 |
| MIMAT0034663 | eca-miR-9114 | 7 | ......._ | 1 | 87 |
| MIMAT0033248 | ppc-miR-8218b-5p | 8 | _....... | 2 | 87 |
| MIMAT0030173 | bdi-miR7723a-3p | 7 | _....... | 1 | 87 |
| MIMAT0028650 | mdo-miR-7325-5p | 7 | _....... | 1 | 87 |
| MIMAT0027810 | mmu-miR-6955-5p | 7 | ......._ | 1 | 87 |
| MIMAT0027451 | hsa-miR-6775-3p | 1 | ......._ | 7 | 87 |
| MIMAT0022075 | aca-miR-5452-5p | 2 | _....... | 8 | 87 |
| MIMAT0019049 | hsa-miR-4512 | 8 | ......._ | 2 | 87 |
| MIMAT0017952 | ssc-miR-296-5p | 7 | _....... | 1 | 87 |
| MIMAT0013096 | eca-miR-1291b | 1 | ......._ | 7 | 87 |
| MIMAT0026918 | bta-miR-296-5p | 7 | _....... | 1 | 87 |
| MIMAT0007025 | oan-miR-1363-5p | 7 | _....... | 1 | 87 |
| MIMAT0019909 | hsa-miR-4761-3p | 8 | .t...... | 1 | 87 |
| MIMAT0017317 | rno-miR-770-3p | 8 | ......a. | 1 | 87 |
| MIMAT0037299 | ame-miR-9894 | 6 | __...... | 1 | 75 |
| MIMAT0036581 | tch-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0036139 | chi-miR-328-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035938 | chi-miR-1296 | 8 | _......_ | 3 | 75 |
| MIMAT0035935 | chi-miR-1291 | 2 | ......__ | 7 | 75 |
| MIMAT0035495 | bdi-miR9488 | 7 | __...... | 2 | 75 |
| MIMAT0035268 | gsa-miR-281-5p | 8 | __...... | 3 | 75 |
| MIMAT0035018 | efu-miR-9321 | 7 | ......__ | 2 | 75 |
| MIMAT0034738 | eca-miR-9161 | 8 | ......__ | 3 | 75 |
| MIMAT0034413 | cfa-miR-1296 | 8 | _......_ | 3 | 75 |
| MIMAT0034080 | gra-miR8699 | 6 | _......_ | 1 | 75 |
| MIMAT0033987 | gra-miR8637 | 1 | ......__ | 6 | 75 |
| MIMAT0033342 | str-miR-81b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0033114 | ppc-miR-8298-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032990 | ppc-miR-8260-3p | 8 | __...... | 3 | 75 |
| MIMAT0032896 | ppc-miR-8226-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032866 | ppc-miR-8218a-5p | 7 | __...... | 2 | 75 |
| MIMAT0032743 | ssa-miR-8159-3p | 6 | _......_ | 1 | 75 |
| MIMAT0030411 | hsa-miR-7843-5p | 6 | __...... | 1 | 75 |
| MIMAT0029547 | ipu-miR-7551 | 7 | ......__ | 2 | 75 |
| MIMAT0028756 | mdo-miR-7367-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028231 | hsa-miR-7160-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028033 | mmu-miR-7064-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027746 | mmu-miR-6923-5p | 8 | __...... | 3 | 75 |
| MIMAT0027690 | hsa-miR-6895-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027654 | hsa-miR-6877-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027603 | hsa-miR-6851-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027398 | hsa-miR-6749-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027390 | hsa-miR-6744-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025637 | gga-miR-6566-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025147 | mmu-miR-6396 | 7 | ......__ | 2 | 75 |
| MIMAT0025146 | mmu-miR-6395 | 3 | _......_ | 8 | 75 |
| MIMAT0025080 | mmu-miR-6337 | 7 | __...... | 2 | 75 |
| MIMAT0027332 | ppe-miR6296 | 3 | ......__ | 8 | 75 |
| MIMAT0024573 | bta-miR-3141 | 6 | __...... | 1 | 75 |
| MIMAT0024406 | ppy-miR-2278 | 6 | __...... | 1 | 75 |
| MIMAT0024328 | mml-miR-1296-5p | 8 | _......_ | 3 | 75 |
| MIMAT0024208 | ggo-miR-1291 | 3 | _......_ | 8 | 75 |
| MIMAT0024172 | ggo-miR-1296 | 8 | _......_ | 3 | 75 |
| MIMAT0024166 | ggo-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0023914 | cgr-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0022370 | mmu-miR-5621-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022305 | cel-miR-5592-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021059 | gma-miR5036 | 3 | ......__ | 8 | 75 |
| MIMAT0021039 | hsa-miR-5008-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020476 | bfl-miR-4889a | 3 | _......_ | 8 | 75 |
| MIMAT0020451 | bfl-miR-34c | 1 | __...... | 6 | 75 |
| MIMAT0019883 | hsa-miR-4747-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019845 | hsa-miR-4726-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019835 | hsa-miR-4721 | 7 | __...... | 2 | 75 |
| MIMAT0019774 | hsa-miR-4687-5p | 3 | __...... | 8 | 75 |
| MIMAT0022977 | hsa-miR-4632-5p | 6 | __...... | 1 | 75 |
| MIMAT0019338 | mmu-miR-3961 | 2 | __...... | 7 | 75 |
| MIMAT0018192 | hsa-miR-3918 | 8 | _......_ | 3 | 75 |
| MIMAT0018896 | tca-miR-193-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017996 | hsa-miR-3616-3p | 7 | __...... | 2 | 75 |
| MIMAT0022964 | ssc-miR-1296-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016921 | hsa-miR-4290 | 2 | __...... | 7 | 75 |
| MIMAT0017904 | rno-miR-328b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016217 | ppy-miR-1296 | 8 | _......_ | 3 | 75 |
| MIMAT0016213 | ppy-miR-1291 | 2 | _......_ | 7 | 75 |
| MIMAT0015831 | ppy-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0015809 | ppy-miR-296-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015010 | hsa-miR-3141 | 6 | __...... | 1 | 75 |
| MIMAT0014950 | mmu-miR-3109-3p | 7 | _......_ | 2 | 75 |
| MIMAT0014904 | mmu-miR-3091-3p | 7 | ......__ | 2 | 75 |
| MIMAT0014780 | api-miR-3042 | 6 | __...... | 1 | 75 |
| MIMAT0013949 | ssc-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0013803 | mmu-miR-2861 | 7 | ......__ | 2 | 75 |
| MIMAT0013802 | hsa-miR-2861 | 7 | ......__ | 2 | 75 |
| MIMAT0012968 | eca-miR-1291a | 2 | _......_ | 7 | 75 |
| MIMAT0012929 | eca-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0012890 | eca-miR-1296 | 8 | _......_ | 3 | 75 |
| MIMAT0012057 | bta-miR-2467-3p | 6 | __...... | 1 | 75 |
| MIMAT0012018 | bta-miR-2443 | 7 | __...... | 2 | 75 |
| MIMAT0026921 | hsa-miR-2276-5p | 1 | __...... | 6 | 75 |
| MIMAT0009964 | bta-miR-1296 | 8 | _......_ | 3 | 75 |
| MIMAT0009956 | bta-miR-1291 | 2 | _......_ | 7 | 75 |
| MIMAT0009827 | nve-miR-2043b-3p | 2 | __...... | 7 | 75 |
| MIMAT0009287 | bta-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0008100 | ptr-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0008015 | ptr-miR-1296 | 8 | _......_ | 3 | 75 |
| MIMAT0008009 | ptr-miR-1291 | 2 | _......_ | 7 | 75 |
| MIMAT0006688 | cfa-miR-328 | 3 | _......_ | 8 | 75 |
| MIMAT0006251 | mml-miR-296-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007697 | gga-miR-1785 | 7 | __...... | 2 | 75 |
| MIMAT0007670 | gga-miR-1763 | 6 | __...... | 1 | 75 |
| MIMAT0007548 | gga-miR-1665 | 3 | ......__ | 8 | 75 |
| MIMAT0007477 | gga-miR-1611 | 7 | __...... | 2 | 75 |
| MIMAT0006036 | odi-miR-1483-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007348 | hsa-miR-1470 | 1 | __...... | 6 | 75 |
| MIMAT0007244 | oan-miR-1421y-5p | 8 | __...... | 3 | 75 |
| MIMAT0005881 | hsa-miR-1291 | 2 | _......_ | 7 | 75 |
| MIMAT0005576 | hsa-miR-1226-5p | 8 | __...... | 3 | 75 |
| MIMAT0017238 | mmu-miR-665-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005794 | hsa-miR-1296-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000898 | rno-miR-296-5p | 6 | _......_ | 1 | 75 |
| MIMAT0000752 | hsa-miR-328-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000690 | hsa-miR-296-5p | 6 | _......_ | 1 | 75 |
| MIMAT0000565 | mmu-miR-328-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000564 | rno-miR-328a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000374 | mmu-miR-296-5p | 6 | _......_ | 1 | 75 |
