| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggccgg | 7 | ||
| MIMAT0035709 | bhv5-miR-B12 | 2 | ....... | 8 | 100 |
| MIMAT0030690 | prd-miR-7923-5p | 7 | ....... | 1 | 100 |
| MIMAT0028607 | mdo-miR-7306-3p | 8 | ....... | 2 | 100 |
| MIMAT0025351 | pde-miR1314 | 7 | ....... | 1 | 100 |
| MIMAT0015680 | nvi-miR-2796 | 1 | ....... | 7 | 100 |
| MIMAT0035019 | efu-miR-9279b | 3 | ......_ | 8 | 85 |
| MIMAT0033742 | pxy-miR-8515 | 2 | _...... | 7 | 85 |
| MIMAT0032854 | ppc-miR-235-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032775 | ath-miR8176 | 1 | _...... | 6 | 85 |
| MIMAT0032743 | ssa-miR-8159-3p | 3 | _...... | 8 | 85 |
| MIMAT0031763 | hbv-miR-B2-3p | 2 | _...... | 7 | 85 |
| MIMAT0030471 | prd-miR-84-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027601 | hsa-miR-6850-3p | 7 | _...... | 2 | 85 |
| MIMAT0027462 | hsa-miR-6781-5p | 3 | _...... | 8 | 85 |
| MIMAT0024962 | hme-miR-2796 | 3 | ......_ | 8 | 85 |
| MIMAT0024461 | mse-miR-2796 | 3 | ......_ | 8 | 85 |
| MIMAT0024366 | ppy-miR-4743 | 2 | _...... | 7 | 85 |
| MIMAT0024327 | mml-miR-4743 | 2 | _...... | 7 | 85 |
| MIMAT0024255 | ggo-miR-4743 | 2 | _...... | 7 | 85 |
| MIMAT0024045 | ptr-miR-4743 | 2 | _...... | 7 | 85 |
| MIMAT0023714 | hsa-miR-6089 | 3 | ......_ | 8 | 85 |
| MIMAT0021485 | asu-miR-92-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020560 | bdi-miR5059 | 6 | ......_ | 1 | 85 |
| MIMAT0020214 | dme-miR-4981-3p | 3 | _...... | 8 | 85 |
| MIMAT0019874 | hsa-miR-4743-5p | 2 | _...... | 7 | 85 |
| MIMAT0018851 | tca-miR-3879-3p | 8 | _...... | 3 | 85 |
| MIMAT0018754 | tca-miR-3850-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018713 | tca-miR-2796-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018591 | ame-miR-2796 | 3 | ......_ | 8 | 85 |
| MIMAT0018587 | ame-miR-3800 | 3 | ......_ | 8 | 85 |
| MIMAT0016216 | ppy-miR-1295 | 3 | ......_ | 8 | 85 |
| MIMAT0014790 | api-miR-2796 | 3 | ......_ | 8 | 85 |
| MIMAT0014705 | hsv2-miR-H23-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014388 | cqu-miR-100-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013697 | bmo-miR-2796-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012243 | dps-miR-92c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0011471 | cbr-miR-90b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032060 | dvi-miR-310-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008014 | ptr-miR-1295 | 3 | ......_ | 8 | 85 |
| MIMAT0026916 | hsa-miR-1908-3p | 6 | _...... | 1 | 85 |
| MIMAT0007318 | oan-miR-1420g-5p | 8 | _...... | 3 | 85 |
| MIMAT0005885 | hsa-miR-1295a | 3 | ......_ | 8 | 85 |
| MIMAT0005415 | cre-miR1162-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020819 | dme-miR-92b-5p | 1 | ......_ | 6 | 85 |
