| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggcggt | 7 | ||
| MIMAT0032116 | hsa-miR-4485-5p | 7 | ....... | 1 | 100 |
| MIMAT0016610 | cin-miR-4061-5p | 1 | ....... | 7 | 100 |
| MIMAT0007567 | gga-miR-1680-3p | 2 | ....... | 8 | 100 |
| MIMAT0037137 | ata-miR169c-3p | 1 | _...... | 6 | 85 |
| MIMAT0036099 | chi-miR-25-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035756 | bfv-miR-BF2-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034483 | eca-miR-8954 | 2 | _...... | 7 | 85 |
| MIMAT0034183 | gra-miR8754 | 8 | ......_ | 3 | 85 |
| MIMAT0032562 | ssa-miR-25-3-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032560 | ssa-miR-25-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030534 | prd-miR-5358a-5p | 3 | _...... | 8 | 85 |
| MIMAT0029902 | mmu-miR-7687-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029109 | gga-miR-7477-3p | 7 | _...... | 2 | 85 |
| MIMAT0028574 | mdo-miR-7295-5p | 6 | _...... | 1 | 85 |
| MIMAT0027661 | hsa-miR-6880-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024055 | ptr-miR-3937 | 3 | ......_ | 8 | 85 |
| MIMAT0023869 | cgr-miR-25-5p | 1 | ......_ | 6 | 85 |
| MIMAT0023712 | hsa-miR-6087 | 3 | ......_ | 8 | 85 |
| MIMAT0023703 | hsa-miR-6078 | 6 | ......_ | 1 | 85 |
| MIMAT0023023 | bra-miR5724 | 7 | _...... | 2 | 85 |
| MIMAT0021481 | asu-miR-87a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020149 | dme-miR-4941-3p | 1 | _...... | 6 | 85 |
| MIMAT0018352 | hsa-miR-3937 | 3 | ......_ | 8 | 85 |
| MIMAT0013857 | bta-miR-2899 | 1 | ......_ | 6 | 85 |
| MIMAT0012715 | hvt-miR-H4-3p | 2 | _...... | 7 | 85 |
| MIMAT0008309 | ptr-miR-663a | 1 | ......_ | 6 | 85 |
| MIMAT0006502 | mml-miR-663 | 1 | ......_ | 6 | 85 |
| MIMAT0003326 | hsa-miR-663a | 1 | ......_ | 6 | 85 |
| MIMAT0031946 | dre-miR-25-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026431 | sbi-miR169d-3p | 2 | _...... | 7 | 85 |
| MIMAT0004713 | rno-miR-25-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017049 | mmu-miR-25-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004498 | hsa-miR-25-5p | 1 | ......_ | 6 | 85 |
