| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggggtg | 7 | ||
| MIMAT0036157 | chi-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0032245 | rgl-miR7804-5p | 1 | ....... | 7 | 100 |
| MIMAT0027858 | mmu-miR-6978-5p | 2 | ....... | 8 | 100 |
| MIMAT0027464 | hsa-miR-6782-5p | 2 | ....... | 8 | 100 |
| MIMAT0027394 | hsa-miR-6747-5p | 1 | ....... | 7 | 100 |
| MIMAT0023922 | cgr-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0016049 | ppy-miR-608 | 1 | ....... | 7 | 100 |
| MIMAT0015844 | ppy-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0013136 | eca-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0006282 | mml-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0003276 | hsa-miR-608 | 1 | ....... | 7 | 100 |
| MIMAT0004694 | hsa-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0004653 | mmu-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0004652 | rno-miR-342-5p | 1 | ....... | 7 | 100 |
| MIMAT0036814 | oha-miR-204-2-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034824 | efu-miR-9223i | 8 | _...... | 3 | 85 |
| MIMAT0032780 | ath-miR8181 | 3 | _...... | 8 | 85 |
| MIMAT0030894 | stu-miR8004 | 1 | ......_ | 6 | 85 |
| MIMAT0030544 | prd-miR-7887-5p | 1 | _...... | 6 | 85 |
| MIMAT0028656 | mdo-miR-7327-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028117 | hsa-miR-7110-5p | 3 | _...... | 8 | 85 |
| MIMAT0028088 | mmu-miR-7091-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027916 | mmu-miR-7006-5p | 3 | _...... | 8 | 85 |
| MIMAT0027878 | mmu-miR-6988-5p | 1 | _...... | 6 | 85 |
| MIMAT0027828 | mmu-miR-6964-5p | 3 | _...... | 8 | 85 |
| MIMAT0027786 | mmu-miR-6943-5p | 2 | _...... | 7 | 85 |
| MIMAT0027762 | mmu-miR-6931-5p | 2 | _...... | 7 | 85 |
| MIMAT0027593 | hsa-miR-6846-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027586 | hsa-miR-6842-5p | 3 | _...... | 8 | 85 |
| MIMAT0027538 | hsa-miR-6819-5p | 3 | _...... | 8 | 85 |
| MIMAT0027524 | hsa-miR-6812-5p | 3 | _...... | 8 | 85 |
| MIMAT0027505 | hsa-miR-6802-3p | 8 | _...... | 3 | 85 |
| MIMAT0027503 | hsa-miR-6801-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027491 | hsa-miR-6795-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027404 | hsa-miR-6752-5p | 3 | _...... | 8 | 85 |
| MIMAT0027377 | hsa-miR-6738-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027375 | hsa-miR-6737-5p | 3 | _...... | 8 | 85 |
| MIMAT0025688 | gga-miR-6594-5p | 3 | _...... | 8 | 85 |
| MIMAT0025598 | gga-miR-6547-3p | 6 | ......_ | 1 | 85 |
| MIMAT0023410 | hco-miR-5890f-3p | 8 | ......_ | 3 | 85 |
| MIMAT0023393 | hco-miR-5890d | 8 | ......_ | 3 | 85 |
| MIMAT0021259 | mtr-miR5259 | 3 | ......_ | 8 | 85 |
| MIMAT0021125 | hsa-miR-5194 | 3 | ......_ | 8 | 85 |
| MIMAT0021096 | osa-miR5148c | 3 | ......_ | 8 | 85 |
| MIMAT0021095 | osa-miR5148b | 3 | ......_ | 8 | 85 |
| MIMAT0021094 | osa-miR5148a | 3 | ......_ | 8 | 85 |
| MIMAT0019737 | hsa-miR-4664-5p | 2 | _...... | 7 | 85 |
| MIMAT0019715 | hsa-miR-4651 | 2 | _...... | 7 | 85 |
| MIMAT0019700 | hsa-miR-4640-3p | 6 | _...... | 1 | 85 |
| MIMAT0019653 | pma-miR-4619 | 6 | _...... | 1 | 85 |
| MIMAT0019239 | oar-miR-665-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019017 | hsa-miR-4483 | 1 | _...... | 6 | 85 |
| MIMAT0018351 | hsa-miR-3936 | 3 | ......_ | 8 | 85 |
| MIMAT0018904 | tca-miR-3900-5p | 3 | _...... | 8 | 85 |
| MIMAT0018712 | tca-miR-2796-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018658 | tca-miR-3817-5p | 3 | _...... | 8 | 85 |
| MIMAT0017870 | rno-miR-409b | 1 | ......_ | 6 | 85 |
| MIMAT0014907 | mmu-miR-3093-5p | 8 | _...... | 3 | 85 |
| MIMAT0014704 | hsv2-miR-H22 | 1 | ......_ | 6 | 85 |
| MIMAT0014351 | hsv2-miR-H7-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013696 | bmo-miR-2796-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012595 | hsv1-miR-H7-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012471 | dsi-miR-965-5p | 1 | _...... | 6 | 85 |
| MIMAT0012012 | bta-miR-2438 | 2 | _...... | 7 | 85 |
| MIMAT0012002 | bta-miR-2431-3p | 6 | _...... | 1 | 85 |
| MIMAT0011817 | bta-miR-2305 | 3 | _...... | 8 | 85 |
| MIMAT0011803 | bta-miR-2295 | 3 | _...... | 8 | 85 |
| MIMAT0007890 | hsa-miR-1914-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032035 | cel-miR-1823-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007601 | gga-miR-1708 | 2 | _...... | 7 | 85 |
| MIMAT0006814 | oan-miR-1331 | 2 | _...... | 7 | 85 |
| MIMAT0005434 | cre-miR1167 | 1 | _...... | 6 | 85 |
| MIMAT0005394 | cre-miR1151a-3p | 3 | _...... | 8 | 85 |
| MIMAT0005173 | ppt-miR1055 | 3 | ......_ | 8 | 85 |
| MIMAT0015220 | hsv1-miR-H1-3p | 8 | _...... | 3 | 85 |
