| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agggttt | 7 | ||
| MIMAT0016496 | cin-miR-4008a-3p | 1 | ....... | 7 | 100 |
| MIMAT0016492 | cin-miR-1502c-3p | 1 | ....... | 7 | 100 |
| MIMAT0006467 | mml-miR-616 | 7 | ....... | 1 | 100 |
| MIMAT0007471 | gga-miR-1605 | 1 | ....... | 7 | 100 |
| MIMAT0005172 | ppt-miR1054 | 8 | ....... | 2 | 100 |
| MIMAT0036111 | chi-miR-296-3p | 1 | ......_ | 6 | 85 |
| MIMAT0036027 | chi-miR-193b-5p | 3 | _...... | 8 | 85 |
| MIMAT0035733 | rno-miR-193b-5p | 2 | _...... | 7 | 85 |
| MIMAT0035308 | gsa-miR-10b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035100 | efu-miR-193b | 3 | _...... | 8 | 85 |
| MIMAT0034944 | efu-miR-99a | 6 | _...... | 1 | 85 |
| MIMAT0033869 | atr-miR8584 | 8 | ......_ | 3 | 85 |
| MIMAT0033765 | pxy-miR-8524-5p | 3 | _...... | 8 | 85 |
| MIMAT0033761 | pxy-miR-6497 | 1 | _...... | 6 | 85 |
| MIMAT0033724 | pxy-miR-8507-5p | 3 | _...... | 8 | 85 |
| MIMAT0033677 | sma-miR-8478-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033482 | str-miR-8396-5p | 2 | _...... | 7 | 85 |
| MIMAT0033432 | str-miR-8386-5p | 2 | _...... | 7 | 85 |
| MIMAT0032918 | ppc-miR-8233-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032635 | ssa-miR-430c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032550 | ssa-miR-23a-4-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032444 | ssa-miR-192b-3p | 1 | _...... | 6 | 85 |
| MIMAT0031574 | bbe-miR-10b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030931 | stu-miR8008b | 6 | _...... | 1 | 85 |
| MIMAT0030786 | prd-miR-124-5p | 1 | _...... | 6 | 85 |
| MIMAT0030446 | bta-miR-2285ad | 7 | _...... | 2 | 85 |
| MIMAT0029944 | bta-miR-2285y | 7 | _...... | 2 | 85 |
| MIMAT0032193 | lva-miR-10-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032143 | pmi-miR-10-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029053 | gga-miR-7449-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028652 | mdo-miR-193b-5p | 3 | _...... | 8 | 85 |
| MIMAT0028283 | mml-miR-7172-3p | 8 | _...... | 3 | 85 |
| MIMAT0027967 | mmu-miR-7031-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027959 | mmu-miR-7027-3p | 3 | _...... | 8 | 85 |
| MIMAT0027938 | mmu-miR-7017-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027581 | hsa-miR-6839-3p | 3 | _...... | 8 | 85 |
| MIMAT0027546 | hsa-miR-6823-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027443 | hsa-miR-6771-3p | 7 | _...... | 2 | 85 |
| MIMAT0025531 | bta-miR-2285n | 8 | _...... | 3 | 85 |
| MIMAT0025530 | bta-miR-2285o | 6 | _...... | 1 | 85 |
| MIMAT0025023 | sma-miR-10-5p | 6 | ......_ | 1 | 85 |
| MIMAT0024587 | bta-miR-2285l | 7 | _...... | 2 | 85 |
| MIMAT0024492 | mse-miR-2788 | 3 | _...... | 8 | 85 |
| MIMAT0024290 | ggo-miR-296 | 1 | ......_ | 6 | 85 |
| MIMAT0024194 | ggo-miR-629 | 2 | _...... | 7 | 85 |
| MIMAT0024138 | ggo-miR-193b | 3 | _...... | 8 | 85 |
| MIMAT0023825 | cgr-miR-193b-5p | 3 | _...... | 8 | 85 |
| MIMAT0023418 | hco-miR-5904c | 7 | _...... | 2 | 85 |
| MIMAT0023373 | hco-miR-5904b | 8 | _...... | 3 | 85 |
| MIMAT0023361 | hco-miR-5907 | 8 | ......_ | 3 | 85 |
| MIMAT0023153 | mtr-miR5037c | 6 | ......_ | 1 | 85 |
| MIMAT0023151 | mtr-miR5037b | 6 | ......_ | 1 | 85 |
| MIMAT0023150 | mtr-miR5037a | 6 | ......_ | 1 | 85 |
| MIMAT0022268 | hsa-miR-548as-3p | 8 | _...... | 3 | 85 |
| MIMAT0021605 | gma-miR5037b | 6 | ......_ | 1 | 85 |
| MIMAT0021470 | asu-miR-76-5p | 3 | _...... | 8 | 85 |
| MIMAT0021079 | hsa-miR-5087 | 1 | _...... | 6 | 85 |
| MIMAT0020536 | hme-miR-2788-5p | 3 | _...... | 8 | 85 |
| MIMAT0020134 | cel-miR-4927 | 3 | _...... | 8 | 85 |
| MIMAT0019629 | pma-miR-4596 | 1 | _...... | 6 | 85 |
| MIMAT0018869 | tca-miR-3885-3p | 1 | _...... | 6 | 85 |
| MIMAT0018798 | tca-miR-2788-5p | 3 | _...... | 8 | 85 |
| MIMAT0018712 | tca-miR-2796-5p | 3 | _...... | 8 | 85 |
| MIMAT0017964 | ssc-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0022958 | ssc-miR-296-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016253 | sja-miR-10-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014775 | api-miR-3038 | 3 | _...... | 8 | 85 |
| MIMAT0027014 | tgu-miR-193a-5p | 3 | _...... | 8 | 85 |
| MIMAT0013696 | bmo-miR-2796-5p | 3 | _...... | 8 | 85 |
| MIMAT0013685 | bmo-miR-2788 | 3 | _...... | 8 | 85 |
| MIMAT0013557 | cte-miR-2696 | 2 | _...... | 7 | 85 |
| MIMAT0012485 | dsi-miR-981-5p | 2 | _...... | 7 | 85 |
| MIMAT0012219 | dps-miR-981-5p | 2 | _...... | 7 | 85 |
| MIMAT0012063 | bta-miR-2472 | 3 | ......_ | 8 | 85 |
| MIMAT0011223 | sme-miR-10a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009654 | spu-miR-10 | 6 | ......_ | 1 | 85 |
| MIMAT0009468 | bfl-miR-10b | 6 | ......_ | 1 | 85 |
| MIMAT0032098 | dvi-miR-219-3p | 1 | ......_ | 6 | 85 |
| MIMAT0006699 | cfa-miR-193b | 3 | _...... | 8 | 85 |
| MIMAT0026836 | mml-miR-193b-5p | 3 | _...... | 8 | 85 |
| MIMAT0006820 | oan-miR-193-5p | 3 | _...... | 8 | 85 |
| MIMAT0017321 | rno-miR-652-5p | 8 | ......_ | 3 | 85 |
| MIMAT0005204 | ppt-miR1074 | 1 | ......_ | 6 | 85 |
| MIMAT0020878 | dme-miR-981-5p | 2 | _...... | 7 | 85 |
| MIMAT0017271 | mmu-miR-193b-5p | 3 | _...... | 8 | 85 |
| MIMAT0004234 | cel-miR-799 | 8 | ......_ | 3 | 85 |
| MIMAT0003973 | sme-miR-10b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026629 | gga-miR-193b-5p | 3 | _...... | 8 | 85 |
| MIMAT0004810 | hsa-miR-629-5p | 2 | _...... | 7 | 85 |
| MIMAT0004767 | hsa-miR-193b-5p | 3 | _...... | 8 | 85 |
| MIMAT0031912 | ath-miR398c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031911 | ath-miR398b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0020803 | dme-miR-219-3p | 1 | ......_ | 6 | 85 |
