| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtccttc | 8 | ||
| MIMAT0004456 | mdv2-miR-M17-5p | 1 | ........ | 8 | 100 |
| MIMAT0035420 | nve-miR-9459 | 7 | ......._ | 1 | 87 |
| MIMAT0035320 | gsa-miR-71c-5p | 7 | _....... | 1 | 87 |
| MIMAT0034641 | eca-miR-9095 | 8 | _....... | 2 | 87 |
| MIMAT0031007 | hsa-miR-8080 | 7 | _....... | 1 | 87 |
| MIMAT0028132 | mmu-miR-7117-3p | 2 | _....... | 8 | 87 |
| MIMAT0027797 | mmu-miR-6948-3p | 2 | _....... | 8 | 87 |
| MIMAT0027533 | hsa-miR-6816-3p | 7 | _....... | 1 | 87 |
| MIMAT0017629 | aly-miR844-5p | 8 | _....... | 2 | 87 |
| MIMAT0037047 | ssc-miR-9829-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036815 | oha-miR-205a-5p | 1 | __...... | 6 | 75 |
| MIMAT0036713 | oha-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036375 | gma-miR9748 | 6 | __...... | 1 | 75 |
| MIMAT0035958 | chi-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035643 | dvi-miR-9549-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035156 | efu-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0035069 | efu-miR-9328 | 1 | __...... | 6 | 75 |
| MIMAT0035015 | efu-miR-1388 | 6 | ......__ | 1 | 75 |
| MIMAT0034496 | eca-miR-1388 | 6 | ......__ | 1 | 75 |
| MIMAT0034410 | cfa-miR-8900 | 7 | ......__ | 2 | 75 |
| MIMAT0034313 | cfa-miR-8823 | 2 | __...... | 7 | 75 |
| MIMAT0033549 | sma-miR-8422-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033112 | ppc-miR-8297-3p | 2 | __...... | 7 | 75 |
| MIMAT0032581 | ssa-miR-27d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032575 | ssa-miR-27a-2-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032573 | ssa-miR-27a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032495 | ssa-miR-205b-5p | 1 | __...... | 6 | 75 |
| MIMAT0032492 | ssa-miR-205a-5p | 1 | __...... | 6 | 75 |
| MIMAT0032335 | ssa-miR-1338-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031524 | ppe-miR8122-3p | 7 | __...... | 2 | 75 |
| MIMAT0031010 | hsa-miR-8083 | 7 | ......__ | 2 | 75 |
| MIMAT0030848 | stu-miR7981-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030639 | prd-miR-7910a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0030162 | bdi-miR5049-5p | 1 | __...... | 6 | 75 |
| MIMAT0029460 | ipu-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0028841 | mdo-miR-7386h-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028644 | mdo-miR-7322-5p | 8 | __...... | 3 | 75 |
| MIMAT0028530 | mdo-miR-7278-5p | 8 | __...... | 3 | 75 |
| MIMAT0028482 | mdo-miR-7258-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028445 | mmu-miR-7238-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028274 | mml-miR-7170-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028152 | ssc-miR-7138-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026283 | ccr-miR-27c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0026263 | ccr-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0027824 | mmu-miR-6962-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027699 | mmu-miR-6899-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027637 | hsa-miR-6868-3p | 2 | __...... | 7 | 75 |
| MIMAT0027579 | hsa-miR-6838-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025731 | gga-miR-6635-5p | 8 | __...... | 3 | 75 |
| MIMAT0025697 | gga-miR-6603-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025574 | bta-miR-2285q | 6 | _......_ | 1 | 75 |
| MIMAT0024384 | ppy-miR-4515 | 6 | ......__ | 1 | 75 |
| MIMAT0024331 | mml-miR-3173 | 6 | __...... | 1 | 75 |
| MIMAT0024251 | ggo-miR-1252 | 7 | __...... | 2 | 75 |
| MIMAT0024050 | ptr-miR-3117 | 8 | ......__ | 3 | 75 |
| MIMAT0024039 | ptr-miR-1252 | 7 | __...... | 2 | 75 |
| MIMAT0023845 | cgr-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0023447 | hco-miR-5945-3p | 7 | ......__ | 2 | 75 |
| MIMAT0023409 | hco-miR-5890f-5p | 8 | ......__ | 3 | 75 |
| MIMAT0023402 | hco-miR-5890e | 8 | ......__ | 3 | 75 |
| MIMAT0023224 | gma-miR2111d | 1 | _......_ | 6 | 75 |
| MIMAT0023189 | gma-miR5770b | 8 | ......__ | 3 | 75 |
| MIMAT0023167 | gma-miR5770a | 8 | ......__ | 3 | 75 |
| MIMAT0022812 | sha-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0022581 | ola-miR-27c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022567 | ola-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022457 | gma-miR2111a | 1 | _......_ | 6 | 75 |
| MIMAT0022132 | osa-miR5499 | 6 | __...... | 1 | 75 |
| MIMAT0022125 | osa-miR5492 | 7 | __...... | 2 | 75 |
| MIMAT0021855 | aca-miR-205a | 1 | __...... | 6 | 75 |
| MIMAT0021760 | aca-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021618 | gma-miR5377 | 8 | __...... | 3 | 75 |
| MIMAT0021398 | rmi-miR-5325 | 8 | __...... | 3 | 75 |
| MIMAT0021393 | rmi-miR-5320 | 8 | __...... | 3 | 75 |
| MIMAT0020567 | tae-miR5085 | 6 | _......_ | 1 | 75 |
| MIMAT0020455 | bfl-miR-4875a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019905 | hsa-miR-4759 | 7 | ......__ | 2 | 75 |
| MIMAT0019869 | hsa-miR-4740-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019517 | pma-miR-205a-5p | 1 | __...... | 6 | 75 |
| MIMAT0019083 | hsa-miR-4540 | 3 | ......__ | 8 | 75 |
| MIMAT0019072 | hsa-miR-4533 | 8 | __...... | 3 | 75 |
| MIMAT0019052 | hsa-miR-4515 | 6 | ......__ | 1 | 75 |
| MIMAT0018283 | gma-miR4378a | 8 | ......__ | 3 | 75 |
| MIMAT0018269 | gma-miR4368b | 6 | _......_ | 1 | 75 |
| MIMAT0018248 | gma-miR4356 | 7 | ......__ | 2 | 75 |
| MIMAT0018810 | tca-miR-2944c-5p | 6 | __...... | 1 | 75 |
| MIMAT0016638 | cin-miR-4075-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016481 | cin-miR-4006e-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016433 | cin-miR-4000b-1-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016429 | cin-miR-4000d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016367 | lja-miR2111-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016239 | ppy-miR-1910 | 3 | ......__ | 8 | 75 |
| MIMAT0016177 | ppy-miR-1252 | 7 | __...... | 2 | 75 |
| MIMAT0015798 | ppy-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0015044 | hsa-miR-3169 | 7 | ......__ | 2 | 75 |
| MIMAT0014979 | hsa-miR-3117-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027019 | tgu-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014468 | tgu-miR-2965 | 7 | ......__ | 2 | 75 |
| MIMAT0014304 | aae-miR-2944b-5p | 6 | __...... | 1 | 75 |
| MIMAT0014302 | aae-miR-2944a-5p | 6 | __...... | 1 | 75 |
| MIMAT0015344 | zma-miR395l-5p | 3 | __...... | 8 | 75 |
| MIMAT0013224 | eca-miR-501-5p | 2 | __...... | 7 | 75 |
| MIMAT0013091 | eca-miR-1248 | 1 | __...... | 6 | 75 |
| MIMAT0012962 | eca-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0012862 | hvt-miR-H10 | 1 | __...... | 6 | 75 |
| MIMAT0012749 | mdo-miR-205a | 1 | __...... | 6 | 75 |
| MIMAT0013590 | bta-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0013556 | cte-miR-2695 | 7 | ......__ | 2 | 75 |
| MIMAT0011667 | ppc-miR-2252 | 1 | __...... | 6 | 75 |
| MIMAT0011292 | dre-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0009845 | cfa-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0019121 | tca-miR-219-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007969 | ptr-miR-1237 | 1 | __...... | 6 | 75 |
| MIMAT0011142 | xla-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0007884 | hsa-miR-1910-5p | 3 | ......__ | 8 | 75 |
| MIMAT0006740 | cfa-miR-1844 | 6 | ......__ | 1 | 75 |
| MIMAT0006236 | mml-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0007478 | gga-miR-1612 | 6 | __...... | 1 | 75 |
| MIMAT0007409 | gga-miR-1553-5p | 1 | ......__ | 6 | 75 |
| MIMAT0006142 | mdo-miR-1543 | 3 | ......__ | 8 | 75 |
| MIMAT0007333 | gga-miR-1456-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007168 | oan-miR-1388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006866 | oan-miR-205-5p | 1 | __...... | 6 | 75 |
| MIMAT0005944 | hsa-miR-1252-5p | 7 | __...... | 2 | 75 |
| MIMAT0005592 | hsa-miR-1237-3p | 1 | __...... | 6 | 75 |
| MIMAT0005412 | cre-miR1160.3 | 6 | _......_ | 1 | 75 |
| MIMAT0005404 | cre-miR1155 | 2 | ......__ | 7 | 75 |
| MIMAT0005362 | tae-miR1127a | 1 | __...... | 6 | 75 |
| MIMAT0005092 | ppt-miR1222e | 8 | __...... | 3 | 75 |
| MIMAT0005090 | ppt-miR1222c | 8 | __...... | 3 | 75 |
| MIMAT0005089 | ppt-miR1222b | 8 | __...... | 3 | 75 |
| MIMAT0005088 | ppt-miR902l-3p | 7 | __...... | 2 | 75 |
| MIMAT0005086 | ppt-miR902k-3p | 8 | __...... | 3 | 75 |
| MIMAT0005084 | ppt-miR902j-3p | 7 | __...... | 2 | 75 |
| MIMAT0004469 | mdv2-miR-M25-5p | 3 | __...... | 8 | 75 |
| MIMAT0026711 | mdo-miR-27a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0003986 | sme-miR-71b-3p | 1 | __...... | 6 | 75 |
| MIMAT0003697 | xtr-miR-205a | 1 | __...... | 6 | 75 |
| MIMAT0003622 | xtr-miR-205b | 1 | __...... | 6 | 75 |
| MIMAT0003545 | bta-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0003917 | ppt-miR1222a | 8 | __...... | 3 | 75 |
| MIMAT0003502 | mmu-miR-712-5p | 2 | __...... | 7 | 75 |
| MIMAT0002966 | tni-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002965 | fru-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002546 | mne-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002545 | lla-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002544 | ptr-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002543 | ppa-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002542 | age-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002541 | ggo-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0002146 | ssc-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0031949 | dre-miR-27a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0001280 | dre-miR-205-5p | 1 | __...... | 6 | 75 |
| MIMAT0001184 | gga-miR-205a | 1 | __...... | 6 | 75 |
| MIMAT0000878 | rno-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0017059 | mmu-miR-211-3p | 8 | _......_ | 3 | 75 |
| MIMAT0000266 | hsa-miR-205-5p | 1 | __...... | 6 | 75 |
| MIMAT0000238 | mmu-miR-205-5p | 1 | __...... | 6 | 75 |
