| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtcgga | 7 | ||
| MIMAT0022244 | sbi-miR5565f | 2 | ....... | 8 | 100 |
| MIMAT0011678 | ppc-miR-63h | 7 | ....... | 1 | 100 |
| MIMAT0019160 | spu-miR-92b-5p | 2 | ....... | 8 | 100 |
| MIMAT0035499 | bdi-miR9481b | 3 | ......_ | 8 | 85 |
| MIMAT0035487 | bdi-miR9481a | 3 | ......_ | 8 | 85 |
| MIMAT0035254 | gsa-miR-1175-5p | 1 | _...... | 6 | 85 |
| MIMAT0035212 | dme-miR-9374-3p | 1 | ......_ | 6 | 85 |
| MIMAT0034836 | efu-miR-9231 | 3 | ......_ | 8 | 85 |
| MIMAT0034358 | cfa-miR-8859b | 2 | _...... | 7 | 85 |
| MIMAT0033461 | str-miR-360-3p | 3 | _...... | 8 | 85 |
| MIMAT0033422 | str-miR-7880v-5p | 2 | _...... | 7 | 85 |
| MIMAT0033350 | str-miR-7880j-5p | 3 | _...... | 8 | 85 |
| MIMAT0028826 | mdo-miR-7385a-5p | 3 | _...... | 8 | 85 |
| MIMAT0025477 | hsa-miR-6510-3p | 8 | ......_ | 3 | 85 |
| MIMAT0023439 | hco-miR-5943 | 2 | _...... | 7 | 85 |
| MIMAT0023433 | hco-miR-5938 | 8 | ......_ | 3 | 85 |
| MIMAT0019949 | hsa-miR-4785 | 3 | ......_ | 8 | 85 |
| MIMAT0018040 | vvi-miR3634-3p | 8 | _...... | 3 | 85 |
| MIMAT0017766 | esi-miR3461-3p | 6 | _...... | 1 | 85 |
| MIMAT0009694 | aqu-miR-2018-5p | 2 | _...... | 7 | 85 |
| MIMAT0009437 | mmu-miR-1964-3p | 6 | ......_ | 1 | 85 |
