| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtctgag | 8 | ||
| MIMAT0036205 | chi-miR-3958-5p | 2 | _....... | 8 | 87 |
| MIMAT0035123 | efu-miR-143 | 1 | _....... | 7 | 87 |
| MIMAT0023297 | osa-miR5824 | 1 | ......._ | 7 | 87 |
| MIMAT0018737 | tca-miR-3477-3p | 7 | ......._ | 1 | 87 |
| MIMAT0014916 | mmu-miR-3097-3p | 7 | _....... | 1 | 87 |
| MIMAT0012048 | bta-miR-2461-3p | 7 | ......._ | 1 | 87 |
| MIMAT0011800 | bta-miR-2292 | 2 | ......._ | 8 | 87 |
| MIMAT0003510 | mmu-miR-717 | 7 | _....... | 1 | 87 |
| MIMAT0028349 | mml-miR-7194-3p | 8 | .a...... | 1 | 87 |
| MIMAT0017392 | hsa-miR-3200-5p | 1 | .a...... | 8 | 87 |
| MIMAT0011629 | crm-miR-2230-5p | 1 | ......t. | 8 | 87 |
| MIMAT0037060 | ssc-miR-9842-5p | 7 | __...... | 2 | 75 |
| MIMAT0036341 | gma-miR5780b | 1 | __...... | 6 | 75 |
| MIMAT0035429 | nve-miR-9464 | 1 | __...... | 6 | 75 |
| MIMAT0034969 | efu-miR-9301 | 1 | ......__ | 6 | 75 |
| MIMAT0034701 | eca-miR-8908f | 8 | __...... | 3 | 75 |
| MIMAT0034693 | eca-miR-9141 | 1 | __...... | 6 | 75 |
| MIMAT0034652 | eca-miR-9105 | 1 | __...... | 6 | 75 |
| MIMAT0034622 | eca-miR-9077 | 1 | __...... | 6 | 75 |
| MIMAT0034575 | eca-miR-9033 | 1 | __...... | 6 | 75 |
| MIMAT0034470 | eca-miR-8941 | 1 | __...... | 6 | 75 |
| MIMAT0034418 | cfa-miR-8908f | 8 | __...... | 3 | 75 |
| MIMAT0034399 | cfa-miR-8892 | 2 | ......__ | 7 | 75 |
| MIMAT0033781 | pxy-miR-8534-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033281 | ppc-miR-8359-3p | 7 | _......_ | 2 | 75 |
| MIMAT0033041 | ppc-miR-8272-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032867 | ppc-miR-8218a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0031656 | bbe-miR-252a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031538 | ppe-miR8126-5p | 1 | __...... | 6 | 75 |
| MIMAT0030768 | prd-miR-7949-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029855 | mmu-miR-3569-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028979 | oan-miR-7415-3p | 3 | __...... | 8 | 75 |
| MIMAT0028878 | mdo-miR-7385f-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028858 | mdo-miR-7385e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028832 | mdo-miR-7385d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028830 | mdo-miR-7385c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028828 | mdo-miR-7385b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028712 | mdo-miR-7350-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028636 | mdo-miR-7318-5p | 7 | __...... | 2 | 75 |
| MIMAT0028235 | hsa-miR-7162-3p | 1 | __...... | 6 | 75 |
| MIMAT0028145 | ssc-miR-7135-5p | 3 | __...... | 8 | 75 |
| MIMAT0026362 | bma-miR-5863 | 8 | ......__ | 3 | 75 |
| MIMAT0028086 | mmu-miR-7090-5p | 7 | __...... | 2 | 75 |
| MIMAT0027975 | mmu-miR-7035-3p | 1 | __...... | 6 | 75 |
| MIMAT0027956 | mmu-miR-7026-5p | 2 | __...... | 7 | 75 |
| MIMAT0027791 | mmu-miR-6945-3p | 1 | __...... | 6 | 75 |
| MIMAT0027422 | hsa-miR-6761-5p | 1 | __...... | 6 | 75 |
| MIMAT0025781 | gga-miR-6677-3p | 8 | __...... | 3 | 75 |
| MIMAT0025321 | bmo-miR-6497-5p | 3 | __...... | 8 | 75 |
| MIMAT0025239 | ptc-miR6436 | 7 | ......__ | 2 | 75 |
| MIMAT0031125 | rno-miR-1199-5p | 1 | __...... | 6 | 75 |
| MIMAT0023426 | hco-miR-5934 | 3 | ......__ | 8 | 75 |
| MIMAT0022048 | aca-miR-5427 | 1 | ......__ | 6 | 75 |
| MIMAT0019925 | hsa-miR-4771 | 8 | ......__ | 3 | 75 |
| MIMAT0019897 | hsa-miR-499b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019767 | hsa-miR-4682 | 1 | __...... | 6 | 75 |
| MIMAT0019718 | hsa-miR-4653-5p | 3 | __...... | 8 | 75 |
| MIMAT0019712 | hsa-miR-4649-3p | 1 | __...... | 6 | 75 |
| MIMAT0019533 | pma-miR-222-5p | 7 | __...... | 2 | 75 |
| MIMAT0019029 | hsa-miR-4494 | 7 | ......__ | 2 | 75 |
| MIMAT0018294 | gma-miR4384 | 8 | _......_ | 3 | 75 |
| MIMAT0018196 | hsa-miR-3921 | 3 | __...... | 8 | 75 |
| MIMAT0017980 | ssc-miR-4339 | 3 | __...... | 8 | 75 |
| MIMAT0016924 | hsa-miR-4330 | 7 | __...... | 2 | 75 |
| MIMAT0016856 | hsa-miR-4303 | 2 | __...... | 7 | 75 |
| MIMAT0016179 | ppy-miR-1254 | 1 | ......__ | 6 | 75 |
| MIMAT0017732 | aly-miR3448-3p | 1 | __...... | 6 | 75 |
| MIMAT0015636 | bmo-miR-3428 | 6 | _......_ | 1 | 75 |
| MIMAT0014682 | hma-miR-3013 | 3 | _......_ | 8 | 75 |
| MIMAT0012782 | mml-miR-622 | 3 | ......__ | 8 | 75 |
| MIMAT0013738 | bmo-miR-2827 | 6 | ......__ | 1 | 75 |
| MIMAT0012296 | dps-miR-2511 | 3 | ......__ | 8 | 75 |
| MIMAT0011922 | bta-miR-2376 | 3 | __...... | 8 | 75 |
| MIMAT0010205 | hsv2-miR-H2 | 1 | __...... | 6 | 75 |
| MIMAT0009819 | nve-miR-2047-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009149 | bkv-miR-B1-5p | 2 | __...... | 7 | 75 |
| MIMAT0009147 | jcv-miR-J1-5p | 2 | __...... | 7 | 75 |
| MIMAT0009371 | bta-miR-759 | 7 | ......__ | 2 | 75 |
| MIMAT0008283 | ptr-miR-622 | 3 | ......__ | 8 | 75 |
| MIMAT0006630 | cfa-miR-1837 | 7 | __...... | 2 | 75 |
| MIMAT0026904 | mml-miR-627-5p | 3 | ......__ | 8 | 75 |
| MIMAT0007651 | gga-miR-1746 | 6 | __...... | 1 | 75 |
| MIMAT0007454 | gga-miR-1591-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026755 | oan-miR-1420e-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005860 | mmu-miR-1199-5p | 1 | __...... | 6 | 75 |
| MIMAT0017292 | rno-miR-880-5p | 8 | __...... | 3 | 75 |
| MIMAT0017266 | mmu-miR-880-5p | 8 | __...... | 3 | 75 |
| MIMAT0014961 | mmu-miR-344d-2-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003421 | ebv-miR-BART11-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003291 | hsa-miR-622 | 3 | ......__ | 8 | 75 |
