| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtgacg | 7 | ||
| MIMAT0022137 | osa-miR5504 | 1 | ....... | 7 | 100 |
| MIMAT0016290 | sja-miR-3485-5p | 8 | ....... | 2 | 100 |
| MIMAT0001577 | hcmv-miR-UL112-3p | 2 | ....... | 8 | 100 |
| MIMAT0035879 | bra-miR161-3p | 6 | ......_ | 1 | 85 |
| MIMAT0034534 | eca-miR-8995 | 2 | _...... | 7 | 85 |
| MIMAT0034378 | cfa-miR-8878 | 3 | _...... | 8 | 85 |
| MIMAT0034063 | gra-miR8690 | 3 | ......_ | 8 | 85 |
| MIMAT0032980 | ppc-miR-8256-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032941 | ppc-miR-2238i-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032857 | ppc-miR-2238f-3p | 1 | ......_ | 6 | 85 |
| MIMAT0032185 | pmi-miR-2011-5p | 8 | ......_ | 3 | 85 |
| MIMAT0029016 | oan-miR-7433-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027735 | mmu-miR-6917-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025791 | gga-miR-6685-3p | 3 | _...... | 8 | 85 |
| MIMAT0025375 | ssc-miR-489 | 1 | ......_ | 6 | 85 |
| MIMAT0024252 | ggo-miR-668 | 8 | ......_ | 3 | 85 |
| MIMAT0021940 | aca-miR-34a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021121 | hsa-miR-5190 | 3 | ......_ | 8 | 85 |
| MIMAT0019311 | oar-miR-668-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018933 | hsa-miR-4420 | 6 | ......_ | 1 | 85 |
| MIMAT0018301 | gma-miR4387d | 8 | ......_ | 3 | 85 |
| MIMAT0018875 | tca-miR-3888-3p | 2 | _...... | 7 | 85 |
| MIMAT0016445 | cin-miR-4001a-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016311 | sja-miR-3502 | 1 | _...... | 6 | 85 |
| MIMAT0017729 | aly-miR3447-5p | 2 | _...... | 7 | 85 |
| MIMAT0017444 | aly-miR161-3p.2 | 6 | ......_ | 1 | 85 |
| MIMAT0015427 | bmo-miR-3245 | 8 | ......_ | 3 | 85 |
| MIMAT0007744 | gga-miR-449b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007515 | gga-miR-1640 | 8 | ......_ | 3 | 85 |
| MIMAT0007497 | gga-miR-1627-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022945 | hsa-miR-1236-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005555 | mcmv-miR-m107-1-5p | 8 | ......_ | 3 | 85 |
| MIMAT0022935 | mtr-miR398a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003642 | xtr-miR-489 | 1 | ......_ | 6 | 85 |
| MIMAT0003365 | gga-miR-489-3p | 1 | ......_ | 6 | 85 |
| MIMAT0002940 | dre-miR-489 | 1 | ......_ | 6 | 85 |
| MIMAT0002939 | tni-miR-489 | 1 | ......_ | 6 | 85 |
| MIMAT0002938 | fru-miR-489 | 1 | ......_ | 6 | 85 |
