| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtgcgc | 7 | ||
| MIMAT0035226 | dme-miR-9381-3p | 8 | ....... | 2 | 100 |
| MIMAT0026769 | mdo-miR-1545a-5p | 1 | ....... | 7 | 100 |
| MIMAT0003439 | rlcv-miR-rL1-10-3p | 2 | ....... | 8 | 100 |
| MIMAT0036986 | tae-miR9775 | 2 | _...... | 7 | 85 |
| MIMAT0036436 | ggo-miR-521 | 8 | ......_ | 3 | 85 |
| MIMAT0034633 | eca-miR-9088 | 8 | _...... | 3 | 85 |
| MIMAT0034444 | eca-miR-8916 | 2 | _...... | 7 | 85 |
| MIMAT0030748 | prd-miR-7944-5p | 8 | ......_ | 3 | 85 |
| MIMAT0029333 | lja-miR7518 | 8 | _...... | 3 | 85 |
| MIMAT0025853 | hsa-miR-6722-5p | 8 | _...... | 3 | 85 |
| MIMAT0025568 | bta-miR-6532 | 1 | ......_ | 6 | 85 |
| MIMAT0020175 | dme-miR-4957-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016777 | cin-miR-4169-3p | 8 | _...... | 3 | 85 |
| MIMAT0016285 | sja-miR-3482-3p | 8 | _...... | 3 | 85 |
| MIMAT0016134 | ppy-miR-933 | 2 | _...... | 7 | 85 |
| MIMAT0015977 | ppy-miR-521 | 8 | ......_ | 3 | 85 |
| MIMAT0014861 | mmu-miR-3076-3p | 6 | ......_ | 1 | 85 |
| MIMAT0008340 | ptr-miR-933 | 2 | _...... | 7 | 85 |
| MIMAT0008205 | ptr-miR-521 | 8 | ......_ | 3 | 85 |
| MIMAT0006535 | mml-miR-933 | 2 | _...... | 7 | 85 |
| MIMAT0006397 | mml-miR-521 | 8 | ......_ | 3 | 85 |
| MIMAT0007407 | gga-miR-1552-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007227 | oan-miR-1409-3p | 8 | _...... | 3 | 85 |
| MIMAT0006944 | oan-miR-1420f | 3 | ......_ | 8 | 85 |
| MIMAT0006929 | oan-miR-1420e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004976 | hsa-miR-933 | 2 | _...... | 7 | 85 |
| MIMAT0004886 | mmu-miR-467d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004885 | mmu-miR-467c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002854 | hsa-miR-521 | 8 | ......_ | 3 | 85 |
| MIMAT0026601 | mml-miR-106b-3p | 8 | ......_ | 3 | 85 |
