| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtggatg | 8 | ||
| MIMAT0030680 | prd-miR-40-5p | 1 | ........ | 8 | 100 |
| MIMAT0021439 | asu-miR-36a-5p | 1 | ........ | 8 | 100 |
| MIMAT0018120 | hsa-miR-3691-5p | 1 | ........ | 8 | 100 |
| MIMAT0020307 | cel-miR-40-5p | 1 | ........ | 8 | 100 |
| MIMAT0037016 | ssc-miR-9798-3p | 2 | ......._ | 8 | 87 |
| MIMAT0035049 | efu-miR-9322 | 2 | _....... | 8 | 87 |
| MIMAT0032882 | ppc-miR-36-5p | 2 | _....... | 8 | 87 |
| MIMAT0030812 | prd-miR-39-5p | 1 | _....... | 7 | 87 |
| MIMAT0028680 | mdo-miR-7336-5p | 2 | _....... | 8 | 87 |
| MIMAT0027598 | hsa-miR-6849-5p | 2 | ......._ | 8 | 87 |
| MIMAT0018108 | hsa-miR-3681-5p | 2 | ......._ | 8 | 87 |
| MIMAT0005427 | cre-miR1169-3p | 2 | _....... | 8 | 87 |
| MIMAT0001583 | hcmv-miR-US25-2-3p | 7 | ......._ | 1 | 87 |
| MIMAT0015098 | cel-miR-48-3p | 8 | _....... | 2 | 87 |
| MIMAT0037245 | ata-miR319-3p | 1 | .c...... | 8 | 87 |
| MIMAT0036228 | chi-miR-432-3p | 1 | .c...... | 8 | 87 |
| MIMAT0034412 | cfa-miR-8902 | 8 | .a...... | 1 | 87 |
| MIMAT0034008 | gra-miR8650 | 1 | ......a. | 8 | 87 |
| MIMAT0027794 | mmu-miR-6947-5p | 8 | .c...... | 1 | 87 |
| MIMAT0027302 | ppe-miR6275 | 1 | ......a. | 8 | 87 |
| MIMAT0021564 | asu-miR-44b-5p | 1 | .c...... | 8 | 87 |
| MIMAT0015707 | nvi-miR-3478 | 1 | .t...... | 8 | 87 |
| MIMAT0014949 | mmu-miR-3109-5p | 1 | .a...... | 8 | 87 |
| MIMAT0020915 | osa-miR319a-3p | 1 | .c...... | 8 | 87 |
| MIMAT0037224 | ata-miR9677-5p | 7 | ......__ | 2 | 75 |
| MIMAT0037187 | ata-miR5062a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0037043 | ssc-miR-9825-5p | 3 | _......_ | 8 | 75 |
| MIMAT0037010 | ssc-miR-9792-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036782 | oha-miR-194-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036395 | gma-miR9760 | 1 | __...... | 6 | 75 |
| MIMAT0036267 | chi-miR-502b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036190 | chi-miR-376e-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036187 | chi-miR-376c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036185 | chi-miR-376b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035802 | tae-miR9676-5p | 1 | __...... | 6 | 75 |
| MIMAT0035424 | nve-miR-9465 | 2 | __...... | 7 | 75 |
| MIMAT0035300 | gsa-miR-1993-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035219 | dme-miR-9378-5p | 1 | ......__ | 6 | 75 |
| MIMAT0034838 | efu-miR-9232 | 2 | __...... | 7 | 75 |
| MIMAT0034808 | efu-miR-9216 | 3 | __...... | 8 | 75 |
| MIMAT0034439 | eca-miR-8911 | 3 | __...... | 8 | 75 |
| MIMAT0034431 | cfa-miR-8834b | 1 | __...... | 6 | 75 |
| MIMAT0034349 | cfa-miR-8854 | 6 | ......__ | 1 | 75 |
| MIMAT0034285 | cfa-miR-8795 | 2 | __...... | 7 | 75 |
| MIMAT0034211 | gra-miR8773 | 2 | __...... | 7 | 75 |
| MIMAT0034199 | gra-miR8765 | 3 | ......__ | 8 | 75 |
| MIMAT0034051 | gra-miR8680 | 3 | ......__ | 8 | 75 |
| MIMAT0033833 | atr-miR8560 | 6 | ......__ | 1 | 75 |
| MIMAT0033716 | pxy-miR-8504 | 7 | __...... | 2 | 75 |
| MIMAT0032850 | ppc-miR-2235b-5p | 7 | __...... | 2 | 75 |
| MIMAT0032656 | ssa-miR-462b-3p | 3 | __...... | 8 | 75 |
| MIMAT0032654 | ssa-miR-462a-3p | 3 | __...... | 8 | 75 |
| MIMAT0032452 | ssa-miR-194c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032450 | ssa-miR-194b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032448 | ssa-miR-194a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031474 | ppe-miR393a | 6 | __...... | 1 | 75 |
| MIMAT0030983 | hsa-miR-8056 | 2 | _......_ | 7 | 75 |
| MIMAT0030824 | prd-miR-7962-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030784 | prd-miR-44-5p | 2 | __...... | 7 | 75 |
| MIMAT0030369 | ptc-miR6476c | 3 | ......__ | 8 | 75 |
| MIMAT0030368 | ptc-miR6476b | 3 | ......__ | 8 | 75 |
| MIMAT0032240 | rgl-miR7799 | 1 | ......__ | 6 | 75 |
| MIMAT0030085 | bdi-miR159b-3p.2 | 6 | _......_ | 1 | 75 |
| MIMAT0029978 | mtr-miR172d-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029804 | mmu-miR-7651-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028815 | mdo-miR-7379-3p | 3 | __...... | 8 | 75 |
| MIMAT0028651 | mdo-miR-7325-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028604 | mdo-miR-7305-5p | 7 | __...... | 2 | 75 |
| MIMAT0028600 | mdo-miR-7303-5p | 7 | __...... | 2 | 75 |
| MIMAT0028505 | mdo-miR-7267-3p | 6 | __...... | 1 | 75 |
| MIMAT0028417 | mmu-miR-7224-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028167 | hcmv-miR-US29-5p | 1 | __...... | 6 | 75 |
| MIMAT0026445 | sbi-miR6232a-3p | 1 | __...... | 6 | 75 |
| MIMAT0026373 | bma-miR-5874 | 6 | ......__ | 1 | 75 |
| MIMAT0026344 | bma-miR-5846 | 1 | _......_ | 6 | 75 |
| MIMAT0027919 | mmu-miR-7007-3p | 8 | __...... | 3 | 75 |
| MIMAT0027881 | mmu-miR-6989-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027851 | mmu-miR-6974-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027712 | mmu-miR-6906-5p | 2 | __...... | 7 | 75 |
| MIMAT0027455 | hsa-miR-6777-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027389 | hsa-miR-6744-5p | 1 | __...... | 6 | 75 |
| MIMAT0025544 | bta-miR-3956 | 3 | _......_ | 8 | 75 |
| MIMAT0025475 | hsa-miR-6509-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025308 | prv-miR-LLT5 | 3 | ......__ | 8 | 75 |
| MIMAT0025217 | ptc-miR6476a | 3 | ......__ | 8 | 75 |
| MIMAT0025189 | ptc-miR6463 | 1 | __...... | 6 | 75 |
| MIMAT0024935 | hme-miR-1175 | 2 | ......__ | 7 | 75 |
| MIMAT0027280 | ppe-miR6263 | 2 | ......__ | 7 | 75 |
| MIMAT0024855 | rno-miR-378b | 1 | ......__ | 6 | 75 |
| MIMAT0024812 | hvu-miR6188 | 2 | _......_ | 7 | 75 |
| MIMAT0024790 | hbr-miR6171 | 3 | _......_ | 8 | 75 |
| MIMAT0024548 | cca-miR6110-3p | 6 | _......_ | 1 | 75 |
| MIMAT0024070 | ptr-miR-3165 | 3 | _......_ | 8 | 75 |
| MIMAT0023489 | hco-miR-5979 | 1 | __...... | 6 | 75 |
| MIMAT0023253 | osa-miR5788 | 1 | __...... | 6 | 75 |
| MIMAT0022623 | ola-miR-194-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022324 | cin-miR-5600-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022099 | aca-miR-5466 | 1 | __...... | 6 | 75 |
| MIMAT0022085 | aca-miR-5458 | 8 | _......_ | 3 | 75 |
| MIMAT0022069 | aca-miR-5447 | 3 | _......_ | 8 | 75 |
| MIMAT0021945 | aca-miR-363-5p | 1 | _......_ | 6 | 75 |
| MIMAT0021830 | aca-miR-194-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021829 | aca-miR-194-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021606 | gma-miR5037c | 1 | ......__ | 6 | 75 |
| MIMAT0021604 | gma-miR862b | 3 | __...... | 8 | 75 |
| MIMAT0021533 | asu-miR-1175-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021455 | asu-miR-44a-5p | 2 | __...... | 7 | 75 |
| MIMAT0021084 | hsa-miR-5092 | 7 | _......_ | 2 | 75 |
| MIMAT0020570 | bdi-miR5063 | 6 | ......__ | 1 | 75 |
| MIMAT0021075 | gma-miR5044 | 3 | ......__ | 8 | 75 |
| MIMAT0019978 | hsa-miR-4800-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019940 | hsa-miR-4436b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019914 | hsa-miR-4764-5p | 1 | __...... | 6 | 75 |
| MIMAT0019889 | hsa-miR-4752 | 3 | _......_ | 8 | 75 |
| MIMAT0019501 | pma-miR-194-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019284 | oar-miR-376b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019279 | oar-miR-376c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019277 | oar-miR-376e-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018818 | tca-miR-1175-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018779 | tca-miR-3851d-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018522 | ame-miR-3752 | 1 | _......_ | 6 | 75 |
| MIMAT0016934 | bta-miR-3578 | 8 | _......_ | 3 | 75 |
| MIMAT0017960 | ssc-miR-376c | 1 | _......_ | 6 | 75 |
| MIMAT0017951 | ssc-miR-194b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016663 | cin-miR-4087-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017903 | rno-miR-3595 | 1 | _......_ | 6 | 75 |
| MIMAT0016278 | sja-miR-2d-5p | 8 | __...... | 3 | 75 |
| MIMAT0016274 | sja-miR-3479-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016185 | ppy-miR-1261 | 1 | _......_ | 6 | 75 |
| MIMAT0017740 | ath-miR774b-3p | 6 | __...... | 1 | 75 |
| MIMAT0017706 | aly-miR3437-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015039 | hsa-miR-3165 | 3 | _......_ | 8 | 75 |
| MIMAT0014797 | api-miR-3054 | 3 | ......__ | 8 | 75 |
| MIMAT0014681 | hma-miR-3012b | 3 | ......__ | 8 | 75 |
| MIMAT0014680 | hma-miR-3012a | 3 | ......__ | 8 | 75 |
| MIMAT0027001 | tgu-miR-194-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026972 | tgu-miR-363-5p | 1 | _......_ | 6 | 75 |
| MIMAT0014390 | cqu-miR-1175-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014264 | aae-miR-1175-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020364 | ath-miR2934-3p | 6 | __...... | 1 | 75 |
| MIMAT0014066 | rlcv-miR-rL1-20-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015324 | zma-miR169m-3p | 8 | __...... | 3 | 75 |
| MIMAT0017384 | ssc-miR-432-3p | 1 | __...... | 6 | 75 |
| MIMAT0012924 | eca-miR-1261 | 1 | _......_ | 6 | 75 |
| MIMAT0013612 | bmo-miR-1175-5p | 2 | ......__ | 7 | 75 |
| MIMAT0013579 | cte-miR-2710 | 6 | ......__ | 1 | 75 |
| MIMAT0013260 | mtr-miR2589 | 8 | __...... | 3 | 75 |
| MIMAT0012356 | dps-miR-2548-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011945 | bta-miR-2392 | 2 | __...... | 7 | 75 |
| MIMAT0011625 | crm-miR-2228 | 7 | __...... | 2 | 75 |
| MIMAT0011587 | crm-miR-44-5p | 2 | __...... | 7 | 75 |
| MIMAT0011577 | crm-miR-45-5p | 2 | __...... | 7 | 75 |
| MIMAT0012147 | sme-miR-1175-5p | 2 | ......__ | 7 | 75 |
| MIMAT0009947 | bta-miR-376c | 1 | _......_ | 6 | 75 |
| MIMAT0009888 | cfa-miR-376c | 1 | _......_ | 6 | 75 |
| MIMAT0009602 | lgi-miR-1175-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009549 | cte-miR-1175-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009422 | mmu-miR-1951 | 3 | ......__ | 8 | 75 |
| MIMAT0009339 | bta-miR-502b | 7 | _......_ | 2 | 75 |
| MIMAT0007828 | osa-miR1874-3p | 3 | __...... | 8 | 75 |
| MIMAT0026874 | mml-miR-432-3p | 1 | __...... | 6 | 75 |
| MIMAT0026863 | mml-miR-376c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026862 | mml-miR-376b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007644 | gga-miR-1740-3p | 7 | __...... | 2 | 75 |
| MIMAT0007635 | gga-miR-1733 | 2 | __...... | 7 | 75 |
| MIMAT0007018 | oan-miR-194-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005210 | ppt-miR1078 | 3 | __...... | 8 | 75 |
| MIMAT0006791 | pta-miR946a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012127 | sme-miR-756-3p | 6 | __...... | 1 | 75 |
| MIMAT0003916 | ppt-miR1221-5p | 1 | __...... | 6 | 75 |
| MIMAT0003195 | rno-miR-376b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0017219 | rno-miR-376c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005295 | mmu-miR-376c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0002815 | hsa-miR-432-3p | 2 | __...... | 7 | 75 |
| MIMAT0022923 | hsa-miR-376b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003388 | mmu-miR-376b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022861 | hsa-miR-376c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015114 | cel-miR-238-5p | 1 | __...... | 6 | 75 |
| MIMAT0016999 | mmu-miR-194-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020772 | cel-miR-45-5p | 2 | __...... | 7 | 75 |
| MIMAT0020771 | cel-miR-44-5p | 2 | __...... | 7 | 75 |
