| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtgggtc | 8 | ||
| MIMAT0033755 | pxy-miR-279a | 1 | ......._ | 7 | 87 |
| MIMAT0028264 | mml-miR-1180-5p | 8 | _....... | 2 | 87 |
| MIMAT0028126 | hsa-miR-7114-3p | 8 | _....... | 2 | 87 |
| MIMAT0032138 | sma-miR-61-5p | 2 | _....... | 8 | 87 |
| MIMAT0023604 | nta-miR482b-5p | 1 | ......._ | 7 | 87 |
| MIMAT0031163 | stu-miR482e-5p | 1 | ......._ | 7 | 87 |
| MIMAT0019660 | pma-miR-4626 | 1 | ......._ | 7 | 87 |
| MIMAT0026735 | hsa-miR-1180-5p | 8 | _....... | 2 | 87 |
| MIMAT0020807 | dme-miR-279-5p | 1 | ......._ | 7 | 87 |
| MIMAT0033571 | sma-miR-8433-3p | 1 | .t...... | 8 | 87 |
| MIMAT0028394 | mmu-miR-7213-5p | 1 | .c...... | 8 | 87 |
| MIMAT0019086 | rlcv-miR-rL1-7-3p | 1 | ......c. | 8 | 87 |
| MIMAT0036874 | oha-miR-2985b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036871 | oha-miR-2985a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036779 | oha-miR-193-5p | 1 | __...... | 6 | 75 |
| MIMAT0036566 | tch-miR-491-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036251 | chi-miR-491-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035732 | rno-miR-1896 | 3 | _......_ | 8 | 75 |
| MIMAT0035459 | sly-miR482d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0034553 | eca-miR-9012 | 1 | __...... | 6 | 75 |
| MIMAT0034543 | eca-miR-9003 | 7 | ......__ | 2 | 75 |
| MIMAT0034503 | eca-miR-8968 | 3 | __...... | 8 | 75 |
| MIMAT0034188 | gra-miR8757b | 1 | __...... | 6 | 75 |
| MIMAT0033665 | sma-miR-2162-5p | 1 | ......__ | 6 | 75 |
| MIMAT0033494 | str-miR-8400-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033331 | str-miR-81a-5p | 2 | __...... | 7 | 75 |
| MIMAT0032664 | ssa-miR-551-3p | 8 | __...... | 3 | 75 |
| MIMAT0031736 | bbe-miR-4857-3p | 1 | __...... | 6 | 75 |
| MIMAT0031189 | stu-miR7999-5p | 2 | __...... | 7 | 75 |
| MIMAT0030688 | prd-miR-81-5p | 1 | __...... | 6 | 75 |
| MIMAT0029542 | ipu-miR-551 | 8 | __...... | 3 | 75 |
| MIMAT0028956 | oan-miR-2985-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028630 | mdo-miR-7315-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028308 | mml-miR-7181-5p | 1 | __...... | 6 | 75 |
| MIMAT0026329 | ccr-miR-551 | 8 | __...... | 3 | 75 |
| MIMAT0028076 | mmu-miR-7085-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028062 | mmu-miR-7078-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028014 | mmu-miR-7055-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027913 | mmu-miR-7004-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027903 | mmu-miR-7000-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027888 | mmu-miR-6993-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027812 | mmu-miR-6956-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027807 | mmu-miR-6953-3p | 8 | __...... | 3 | 75 |
| MIMAT0027798 | mmu-miR-6949-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027752 | mmu-miR-6926-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027620 | hsa-miR-6769b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027486 | hsa-miR-6793-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027456 | hsa-miR-6778-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027438 | hsa-miR-6769a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027418 | hsa-miR-6759-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027396 | hsa-miR-6748-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027385 | hsa-miR-6742-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027383 | hsa-miR-6741-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025647 | gga-miR-6570-5p | 8 | __...... | 3 | 75 |
| MIMAT0025576 | bta-miR-2285s | 8 | __...... | 3 | 75 |
| MIMAT0025388 | ssc-miR-2366 | 1 | __...... | 6 | 75 |
| MIMAT0025379 | ssc-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0024756 | nta-miR6154b | 1 | __...... | 6 | 75 |
| MIMAT0024755 | nta-miR6154a | 1 | __...... | 6 | 75 |
| MIMAT0024575 | bta-miR-4286 | 8 | ......__ | 3 | 75 |
| MIMAT0027114 | mml-miR-1296-3p | 2 | ......__ | 7 | 75 |
| MIMAT0024196 | ggo-miR-491 | 1 | ......__ | 6 | 75 |
| MIMAT0024188 | ggo-miR-551b | 8 | __...... | 3 | 75 |
| MIMAT0024186 | ggo-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0031160 | stu-miR482b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023539 | ame-miR-6000a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023466 | hco-miR-5962 | 1 | ......__ | 6 | 75 |
| MIMAT0023408 | hco-miR-5927 | 6 | ......__ | 1 | 75 |
| MIMAT0023109 | tur-miR-263b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022406 | ath-miR5644 | 1 | _......_ | 6 | 75 |
| MIMAT0021982 | aca-miR-551 | 8 | __...... | 3 | 75 |
| MIMAT0021826 | aca-miR-193-5p | 1 | __...... | 6 | 75 |
| MIMAT0020765 | sly-miR482e-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020592 | ssc-miR-491 | 1 | ......__ | 6 | 75 |
| MIMAT0020134 | cel-miR-4927 | 1 | _......_ | 6 | 75 |
| MIMAT0019878 | hsa-miR-4745-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019848 | hsa-miR-4727-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019586 | pma-miR-4554 | 1 | __...... | 6 | 75 |
| MIMAT0019584 | pma-miR-4552 | 7 | ......__ | 2 | 75 |
| MIMAT0019558 | pma-miR-551 | 8 | __...... | 3 | 75 |
| MIMAT0019015 | hsa-miR-4481 | 3 | ......__ | 8 | 75 |
| MIMAT0018479 | csi-miR482a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019229 | hsa-miR-3940-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018745 | tca-miR-3848-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017976 | ssc-miR-1296-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016916 | hsa-miR-4286 | 8 | ......__ | 3 | 75 |
| MIMAT0016850 | hsa-miR-4301 | 7 | ......__ | 2 | 75 |
| MIMAT0016773 | cin-miR-4165-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016771 | cin-miR-4163-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016655 | cin-miR-4083-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016385 | gga-miR-3534 | 2 | _......_ | 7 | 75 |
| MIMAT0016160 | ppy-miR-1225-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015998 | ppy-miR-551b | 8 | __...... | 3 | 75 |
| MIMAT0015997 | ppy-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0015911 | ppy-miR-491-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015787 | ppy-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017692 | aly-miR851-3p | 2 | _......_ | 7 | 75 |
| MIMAT0017544 | aly-miR394a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019209 | hsa-miR-3156-3p | 8 | ......__ | 3 | 75 |
| MIMAT0014903 | mmu-miR-3091-5p | 3 | __...... | 8 | 75 |
| MIMAT0014828 | mmu-miR-3061-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014654 | tgu-miR-193b-5p | 1 | __...... | 6 | 75 |
| MIMAT0014541 | tgu-miR-551-3p | 8 | __...... | 3 | 75 |
| MIMAT0014495 | tgu-miR-2985 | 1 | _......_ | 6 | 75 |
| MIMAT0013894 | ssc-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0013838 | bta-miR-669 | 2 | _......_ | 7 | 75 |
| MIMAT0013116 | eca-miR-491-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013094 | eca-miR-551b | 8 | __...... | 3 | 75 |
| MIMAT0013080 | eca-miR-711 | 8 | __...... | 3 | 75 |
| MIMAT0013051 | eca-miR-493a | 3 | __...... | 8 | 75 |
| MIMAT0013025 | eca-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0012921 | eca-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0012820 | ptr-miR-711 | 8 | __...... | 3 | 75 |
| MIMAT0012796 | mml-miR-711 | 8 | __...... | 3 | 75 |
| MIMAT0012764 | mdo-miR-551b-3p | 8 | __...... | 3 | 75 |
| MIMAT0012763 | mdo-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0012734 | hsa-miR-711 | 8 | __...... | 3 | 75 |
| MIMAT0012427 | dsi-miR-1003-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012425 | dsi-miR-1012-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012000 | bta-miR-2430 | 3 | __...... | 8 | 75 |
| MIMAT0011924 | bta-miR-2378 | 2 | _......_ | 7 | 75 |
| MIMAT0011904 | bta-miR-2366 | 1 | __...... | 6 | 75 |
| MIMAT0011450 | cel-miR-1832b-3p | 1 | ......__ | 6 | 75 |
| MIMAT0009913 | cfa-miR-551b | 8 | __...... | 3 | 75 |
| MIMAT0009912 | cfa-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0009347 | bta-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0009332 | bta-miR-491 | 1 | ......__ | 6 | 75 |
| MIMAT0008232 | ptr-miR-551b | 8 | __...... | 3 | 75 |
| MIMAT0008231 | ptr-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0006735 | cfa-miR-193a | 1 | __...... | 6 | 75 |
| MIMAT0006420 | mml-miR-551b-3p | 8 | __...... | 3 | 75 |
| MIMAT0006419 | mml-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0006352 | mml-miR-491-5p | 1 | ......__ | 6 | 75 |
| MIMAT0026837 | mml-miR-194-3p | 2 | ......__ | 7 | 75 |
| MIMAT0006225 | mml-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0026787 | gga-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0007569 | gga-miR-1682 | 1 | __...... | 6 | 75 |
| MIMAT0015245 | cin-miR-1473-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007290 | gga-miR-551-3p | 8 | __...... | 3 | 75 |
| MIMAT0007130 | oan-miR-551-3p | 8 | __...... | 3 | 75 |
| MIMAT0006919 | oan-miR-1346 | 1 | _......_ | 6 | 75 |
| MIMAT0022943 | hsa-miR-1233-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005585 | mml-miR-1230 | 1 | _......_ | 6 | 75 |
| MIMAT0022942 | hsa-miR-1229-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005574 | mml-miR-1225-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005572 | hsa-miR-1225-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005383 | cre-miR1146 | 2 | __...... | 7 | 75 |
| MIMAT0005266 | smo-miR1109 | 2 | ......__ | 7 | 75 |
| MIMAT0005481 | dme-miR-966-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026677 | mdo-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0003794 | bta-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0022930 | mmu-miR-698-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003486 | mmu-miR-491-5p | 1 | ......__ | 6 | 75 |
| MIMAT0003890 | mmu-miR-551b-3p | 8 | __...... | 3 | 75 |
| MIMAT0026637 | hsa-miR-1296-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019091 | rlcv-miR-rL1-15-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003233 | hsa-miR-551b-3p | 8 | __...... | 3 | 75 |
| MIMAT0003214 | hsa-miR-551a | 8 | __...... | 3 | 75 |
| MIMAT0002807 | hsa-miR-491-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031981 | dre-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017148 | rno-miR-194-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004736 | rno-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017073 | mmu-miR-194-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004671 | hsa-miR-194-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004614 | hsa-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0004544 | mmu-miR-193a-5p | 1 | __...... | 6 | 75 |
| MIMAT0015095 | cel-miR-42-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015094 | cel-miR-37-5p | 2 | _......_ | 7 | 75 |
