| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtgtatg | 8 | ||
| MIMAT0036082 | chi-miR-2318 | 2 | _....... | 8 | 87 |
| MIMAT0020573 | bdi-miR5066 | 2 | ......._ | 8 | 87 |
| MIMAT0020035 | sko-miR-4827b | 2 | ......._ | 8 | 87 |
| MIMAT0011841 | bta-miR-2318 | 1 | _....... | 7 | 87 |
| MIMAT0004882 | mmu-miR-466f-3p | 7 | _....... | 1 | 87 |
| MIMAT0017222 | rno-miR-485-3p | 7 | _....... | 1 | 87 |
| MIMAT0021133 | mtr-miR5205a | 8 | .t...... | 1 | 87 |
| MIMAT0019742 | hsa-miR-4666a-3p | 8 | .t...... | 1 | 87 |
| MIMAT0016718 | cin-miR-4124-5p | 1 | .c...... | 8 | 87 |
| MIMAT0010047 | osa-miR2091-3p | 8 | .a...... | 1 | 87 |
| MIMAT0036954 | oha-miR-9-3p | 7 | __...... | 2 | 75 |
| MIMAT0036852 | oha-miR-223-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036505 | tch-miR-539-3p | 8 | __...... | 3 | 75 |
| MIMAT0036208 | chi-miR-3959-3p | 1 | __...... | 6 | 75 |
| MIMAT0036071 | chi-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035987 | chi-miR-154b-3p | 8 | __...... | 3 | 75 |
| MIMAT0035427 | nve-miR-9468 | 3 | ......__ | 8 | 75 |
| MIMAT0035233 | dme-miR-9385-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035038 | efu-miR-485 | 8 | __...... | 3 | 75 |
| MIMAT0034784 | efu-miR-9199 | 6 | ......__ | 1 | 75 |
| MIMAT0034612 | eca-miR-9067 | 6 | ......__ | 1 | 75 |
| MIMAT0034499 | eca-miR-8964 | 1 | ......__ | 6 | 75 |
| MIMAT0034484 | eca-miR-3959 | 1 | __...... | 6 | 75 |
| MIMAT0034355 | cfa-miR-8860 | 6 | ......__ | 1 | 75 |
| MIMAT0034234 | gra-miR7484m | 3 | __...... | 8 | 75 |
| MIMAT0034149 | gra-miR8737 | 1 | _......_ | 6 | 75 |
| MIMAT0034109 | gra-miR8720 | 2 | ......__ | 7 | 75 |
| MIMAT0032802 | cel-miR-8194-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032773 | ath-miR8174 | 3 | _......_ | 8 | 75 |
| MIMAT0030189 | bdi-miR7728-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029672 | cbn-miR-7630 | 7 | ......__ | 2 | 75 |
| MIMAT0028940 | mdo-miR-7399-5p | 8 | __...... | 3 | 75 |
| MIMAT0028934 | mdo-miR-7398t-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028930 | mdo-miR-7398g-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028898 | mdo-miR-7398f-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028896 | mdo-miR-7398e-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028304 | mml-miR-7180-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028034 | mmu-miR-7065-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025859 | blv-miR-B1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025807 | gga-miR-6516-3p | 3 | __...... | 8 | 75 |
| MIMAT0025546 | bta-miR-411c-3p | 1 | __...... | 6 | 75 |
| MIMAT0025153 | mmu-miR-6401 | 7 | ......__ | 2 | 75 |
| MIMAT0024856 | rno-miR-6216 | 7 | _......_ | 2 | 75 |
| MIMAT0027255 | pgi-miR6136b | 7 | __...... | 2 | 75 |
| MIMAT0024056 | ptr-miR-3149 | 3 | __...... | 8 | 75 |
| MIMAT0023098 | tur-miR-137-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022481 | hsa-miR-5689 | 8 | __...... | 3 | 75 |
| MIMAT0021893 | aca-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020636 | mmu-miR-3572-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020004 | cel-miR-4815 | 1 | __...... | 6 | 75 |
| MIMAT0019959 | hsa-miR-4789-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019313 | oar-miR-485-3p | 8 | __...... | 3 | 75 |
| MIMAT0019305 | oar-miR-487a-3p | 8 | __...... | 3 | 75 |
| MIMAT0019303 | oar-miR-3959-3p | 1 | __...... | 6 | 75 |
| MIMAT0018881 | tca-miR-3891-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018762 | tca-miR-3853-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016911 | hsa-miR-4280 | 2 | ......__ | 7 | 75 |
| MIMAT0016584 | cin-miR-4047-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017853 | rno-miR-3572 | 7 | ......__ | 2 | 75 |
| MIMAT0016099 | ppy-miR-675b | 2 | __...... | 7 | 75 |
| MIMAT0015903 | ppy-miR-485-3p | 8 | __...... | 3 | 75 |
| MIMAT0015811 | ppy-miR-297 | 2 | __...... | 7 | 75 |
| MIMAT0017601 | aly-miR823-5p | 3 | __...... | 8 | 75 |
| MIMAT0015517 | bmo-miR-3329 | 7 | __...... | 2 | 75 |
| MIMAT0015022 | hsa-miR-3149 | 3 | __...... | 8 | 75 |
| MIMAT0015002 | hsa-miR-466 | 6 | _......_ | 1 | 75 |
| MIMAT0014886 | mmu-miR-466o-3p | 8 | __...... | 3 | 75 |
| MIMAT0014883 | mmu-miR-466m-3p | 8 | __...... | 3 | 75 |
| MIMAT0013160 | eca-miR-485-3p | 8 | __...... | 3 | 75 |
| MIMAT0017363 | rno-miR-675-3p | 1 | __...... | 6 | 75 |
| MIMAT0013709 | bmo-miR-2804-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013534 | cte-miR-10d | 6 | ......__ | 1 | 75 |
| MIMAT0012493 | dsi-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012365 | dps-miR-2552-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012237 | dps-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011638 | crm-miR-64b-3p | 3 | __...... | 8 | 75 |
| MIMAT0011576 | crm-miR-784-3p | 8 | __...... | 3 | 75 |
| MIMAT0011453 | cel-miR-2209b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0011433 | cel-miR-2209c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011431 | cel-miR-2209a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011429 | cel-miR-2208b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011427 | cel-miR-2208a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011319 | mtr-miR2199 | 8 | _......_ | 3 | 75 |
| MIMAT0032102 | sma-let-7-3p | 6 | __...... | 1 | 75 |
| MIMAT0009133 | pta-miR1316 | 8 | __...... | 3 | 75 |
| MIMAT0019117 | tca-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0008159 | ptr-miR-485 | 8 | __...... | 3 | 75 |
| MIMAT0008080 | ptr-miR-297 | 2 | __...... | 7 | 75 |
| MIMAT0026908 | mml-miR-675-3p | 2 | __...... | 7 | 75 |
| MIMAT0006343 | mml-miR-485-3p | 8 | __...... | 3 | 75 |
| MIMAT0006253 | mml-miR-297 | 2 | __...... | 7 | 75 |
| MIMAT0006064 | odi-miR-1504 | 1 | ......__ | 6 | 75 |
| MIMAT0006048 | odi-miR-1495 | 1 | ......__ | 6 | 75 |
| MIMAT0007019 | oan-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005846 | mmu-miR-467f | 8 | _......_ | 3 | 75 |
| MIMAT0005834 | mmu-miR-466i-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020888 | dme-miR-137-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004450 | hsa-miR-297 | 2 | __...... | 7 | 75 |
| MIMAT0004865 | mmu-miR-297c-5p | 2 | __...... | 7 | 75 |
| MIMAT0006790 | hsa-miR-675-3p | 2 | __...... | 7 | 75 |
| MIMAT0026682 | mdo-miR-223-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003926 | mdv1-miR-M5-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003716 | ebv-miR-BART17-3p | 1 | __...... | 6 | 75 |
| MIMAT0003480 | mmu-miR-297b-5p | 2 | __...... | 7 | 75 |
| MIMAT0003726 | mmu-miR-675-3p | 2 | __...... | 7 | 75 |
| MIMAT0017212 | rno-miR-539-3p | 6 | __...... | 1 | 75 |
| MIMAT0017208 | mmu-miR-539-3p | 6 | __...... | 1 | 75 |
| MIMAT0022705 | hsa-miR-539-3p | 8 | __...... | 3 | 75 |
| MIMAT0002176 | hsa-miR-485-3p | 8 | __...... | 3 | 75 |
| MIMAT0000899 | rno-miR-297 | 2 | __...... | 7 | 75 |
| MIMAT0017165 | rno-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017056 | mmu-miR-223-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020844 | dme-miR-318-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000375 | mmu-miR-297a-5p | 2 | __...... | 7 | 75 |
| MIMAT0000304 | cel-miR-248 | 6 | _......_ | 1 | 75 |
| MIMAT0004570 | hsa-miR-223-5p | 2 | _......_ | 7 | 75 |
