| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agttcaca | 8 | ||
| MIMAT0028686 | mdo-miR-7339-5p | 1 | ........ | 8 | 100 |
| MIMAT0014788 | api-miR-3048 | 8 | ........ | 1 | 100 |
| MIMAT0034900 | efu-miR-27b | 1 | _....... | 7 | 87 |
| MIMAT0013824 | osa-miR2874 | 8 | _....... | 2 | 87 |
| MIMAT0010203 | hsv2-miR-H4-5p | 2 | ......._ | 8 | 87 |
| MIMAT0026585 | mml-miR-124a-5p | 1 | _....... | 7 | 87 |
| MIMAT0026511 | gga-miR-124a-5p | 1 | _....... | 7 | 87 |
| MIMAT0034091 | gra-miR8705 | 1 | ......t. | 8 | 87 |
| MIMAT0034001 | gra-miR8663a | 8 | ......a. | 1 | 87 |
| MIMAT0033675 | sma-miR-8477-5p | 8 | .t...... | 1 | 87 |
| MIMAT0033083 | ppc-miR-8287-5p | 1 | .c...... | 8 | 87 |
| MIMAT0030227 | bdi-miR7743-3p | 8 | ......a. | 1 | 87 |
| MIMAT0030100 | bdi-miR5167b-3p | 8 | .a...... | 1 | 87 |
| MIMAT0028610 | mdo-miR-7307-5p | 1 | ......g. | 8 | 87 |
| MIMAT0027796 | mmu-miR-6948-5p | 1 | ......g. | 8 | 87 |
| MIMAT0022310 | cel-miR-5594-3p | 8 | ......a. | 1 | 87 |
| MIMAT0016448 | cin-miR-4002-5p | 8 | ......a. | 1 | 87 |
| MIMAT0011425 | cel-miR-2207-5p | 8 | .a...... | 1 | 87 |
| MIMAT0010044 | osa-miR1428g-5p | 1 | .a...... | 8 | 87 |
| MIMAT0010043 | osa-miR1428f-5p | 1 | .a...... | 8 | 87 |
| MIMAT0007784 | osa-miR1428e-5p | 1 | .a...... | 8 | 87 |
| MIMAT0037099 | ata-miR5070-3p | 7 | ......__ | 2 | 75 |
| MIMAT0037061 | ssc-miR-9843-3p | 8 | __...... | 3 | 75 |
| MIMAT0036868 | oha-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0036866 | oha-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0036606 | tch-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0036535 | tch-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0036108 | chi-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0036106 | chi-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0036094 | chi-miR-2411-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035490 | bdi-miR9483b | 7 | ......__ | 2 | 75 |
| MIMAT0035489 | bdi-miR9483a | 7 | ......__ | 2 | 75 |
| MIMAT0035450 | sly-miR9472-3p | 1 | __...... | 6 | 75 |
| MIMAT0035090 | efu-miR-9336 | 8 | __...... | 3 | 75 |
| MIMAT0035010 | efu-miR-9320 | 8 | ......__ | 3 | 75 |
| MIMAT0034902 | efu-miR-9270 | 6 | __...... | 1 | 75 |
| MIMAT0034837 | efu-miR-9230c | 6 | ......__ | 1 | 75 |
| MIMAT0034207 | gra-miR8769 | 7 | ......__ | 2 | 75 |
| MIMAT0033191 | ppc-miR-8323-3p | 1 | __...... | 6 | 75 |
| MIMAT0033048 | ppc-miR-8274-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033037 | ppc-miR-2238k-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032940 | ppc-miR-2238i-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032930 | ppc-miR-2238h-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032908 | ppc-miR-8231-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032894 | ppc-miR-2238g-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032856 | ppc-miR-2238f-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032582 | ssa-miR-27d-3p | 1 | __...... | 6 | 75 |
| MIMAT0032579 | ssa-miR-27c-3p | 1 | __...... | 6 | 75 |
| MIMAT0032577 | ssa-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0032574 | ssa-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0030816 | prd-miR-7950b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0030770 | prd-miR-7950a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030712 | prd-miR-7950c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030514 | prd-miR-7879-5p | 8 | __...... | 3 | 75 |
| MIMAT0030053 | oar-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0029977 | mtr-miR2669b | 3 | ......__ | 8 | 75 |
| MIMAT0029677 | cbn-miR-7634 | 3 | __...... | 8 | 75 |
| MIMAT0029541 | ipu-miR-203c | 7 | ......__ | 2 | 75 |
| MIMAT0029491 | ipu-miR-27e | 1 | __...... | 6 | 75 |
| MIMAT0029490 | ipu-miR-27d | 1 | __...... | 6 | 75 |
| MIMAT0029489 | ipu-miR-27c | 1 | __...... | 6 | 75 |
| MIMAT0029488 | ipu-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0029487 | ipu-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0028986 | oan-miR-7419-5p | 3 | __...... | 8 | 75 |
| MIMAT0028932 | mdo-miR-7398h-5p | 8 | __...... | 3 | 75 |
| MIMAT0028770 | mdo-miR-7370i-5p | 2 | __...... | 7 | 75 |
| MIMAT0028723 | mdo-miR-7355-3p | 2 | __...... | 7 | 75 |
| MIMAT0028567 | mdo-miR-7291-3p | 3 | __...... | 8 | 75 |
| MIMAT0028475 | mdo-miR-7254-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028227 | hsa-miR-7158-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028208 | dre-miR-7149-5p | 6 | __...... | 1 | 75 |
| MIMAT0026398 | sbi-miR5565g-5p | 1 | __...... | 6 | 75 |
| MIMAT0026285 | ccr-miR-27d | 1 | __...... | 6 | 75 |
| MIMAT0026284 | ccr-miR-27c-3p | 1 | __...... | 6 | 75 |
| MIMAT0026282 | ccr-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0027990 | mmu-miR-7043-5p | 6 | __...... | 1 | 75 |
| MIMAT0025596 | gga-miR-6546-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027342 | tgu-miR-1467-3p | 1 | __...... | 6 | 75 |
| MIMAT0025124 | mmu-miR-6378 | 3 | _......_ | 8 | 75 |
| MIMAT0025054 | rno-miR-6317 | 6 | _......_ | 1 | 75 |
| MIMAT0025005 | hme-miR-6301-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027293 | ppe-miR6269 | 6 | __...... | 1 | 75 |
| MIMAT0027284 | ppe-miR6265 | 7 | ......__ | 2 | 75 |
| MIMAT0024773 | nta-miR6161d | 6 | ......__ | 1 | 75 |
| MIMAT0024763 | nta-miR1446 | 6 | ......__ | 1 | 75 |
| MIMAT0024264 | ggo-miR-203b | 7 | ......__ | 2 | 75 |
| MIMAT0024204 | ggo-miR-887 | 6 | _......_ | 1 | 75 |
| MIMAT0024112 | ggo-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0024006 | cgr-miR-872-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023932 | cgr-miR-350-3p | 1 | __...... | 6 | 75 |
| MIMAT0023877 | cgr-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0023875 | cgr-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0023192 | gma-miR5763c | 6 | ......__ | 1 | 75 |
| MIMAT0023160 | gma-miR5763b | 6 | ......__ | 1 | 75 |
| MIMAT0023159 | gma-miR5763a | 6 | ......__ | 1 | 75 |
| MIMAT0022789 | sha-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0022647 | ola-miR-27d-3p | 1 | __...... | 6 | 75 |
| MIMAT0022646 | ola-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0022582 | ola-miR-27c-3p | 1 | __...... | 6 | 75 |
| MIMAT0026457 | tur-miR-124-2-5p | 3 | _......_ | 8 | 75 |
| MIMAT0022189 | cel-miR-5549-5p | 8 | __...... | 3 | 75 |
| MIMAT0022174 | osa-miR5538 | 8 | ......__ | 3 | 75 |
| MIMAT0021908 | aca-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0021906 | aca-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0021574 | asu-miR-5356b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021211 | mtr-miR4414b | 6 | __...... | 1 | 75 |
| MIMAT0021019 | hsa-miR-5000-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019814 | hsa-miR-203b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019602 | pma-miR-4570 | 7 | ......__ | 2 | 75 |
| MIMAT0019575 | pma-miR-4545-5p | 2 | __...... | 7 | 75 |
| MIMAT0019415 | pma-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0019413 | pma-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0019082 | hsa-miR-4539 | 8 | ......__ | 3 | 75 |
| MIMAT0017988 | hsa-miR-3611 | 7 | __...... | 2 | 75 |
| MIMAT0017971 | ssc-miR-146a-3p | 8 | __...... | 3 | 75 |
| MIMAT0016835 | cin-miR-4214-5p | 8 | __...... | 3 | 75 |
| MIMAT0016708 | cin-miR-4117-5p | 8 | __...... | 3 | 75 |
| MIMAT0016695 | cin-miR-4108-5p | 8 | __...... | 3 | 75 |
| MIMAT0016651 | cin-miR-4081-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016493 | cin-miR-1502d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016491 | cin-miR-1502c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016489 | cin-miR-1502b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016487 | cin-miR-1502a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017878 | rno-miR-3585-5p | 1 | __...... | 6 | 75 |
| MIMAT0017800 | rno-miR-203b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016122 | ppy-miR-887 | 6 | _......_ | 1 | 75 |
| MIMAT0015941 | ppy-miR-513c | 1 | __...... | 6 | 75 |
| MIMAT0015940 | ppy-miR-513b | 1 | __...... | 6 | 75 |
| MIMAT0015938 | ppy-miR-513a-5p | 1 | __...... | 6 | 75 |
| MIMAT0015734 | ppy-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0015653 | ghr-miR3476-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015385 | bmo-miR-3207 | 7 | __...... | 2 | 75 |
| MIMAT0014899 | mmu-miR-3089-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014534 | tgu-miR-27-3p | 1 | __...... | 6 | 75 |
| MIMAT0013890 | ssc-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0013191 | eca-miR-350 | 1 | __...... | 6 | 75 |
| MIMAT0013139 | eca-miR-345-3p | 8 | ......__ | 3 | 75 |
| MIMAT0013114 | eca-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0012988 | eca-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0013543 | cte-miR-2690 | 6 | __...... | 1 | 75 |
| MIMAT0013476 | mtr-miR2669a | 3 | ......__ | 8 | 75 |
| MIMAT0012519 | dsi-miR-2582a-5p | 1 | __...... | 6 | 75 |
| MIMAT0011973 | bta-miR-2411-3p | 8 | ......__ | 3 | 75 |
| MIMAT0011738 | ppc-miR-2241c | 1 | __...... | 6 | 75 |
| MIMAT0015292 | osa-miR396f-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008330 | ptr-miR-887 | 6 | _......_ | 1 | 75 |
| MIMAT0008078 | ptr-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0007906 | bmo-miR-317-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006710 | cfa-miR-345 | 8 | ......__ | 3 | 75 |
| MIMAT0006704 | cfa-miR-350 | 1 | __...... | 6 | 75 |
| MIMAT0006641 | cfa-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0006613 | cfa-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0006526 | mml-miR-887 | 6 | _......_ | 1 | 75 |
| MIMAT0006424 | mml-miR-556-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026824 | mml-miR-146a-3p | 8 | __...... | 3 | 75 |
| MIMAT0006167 | mml-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0007678 | gga-miR-1769-3p | 8 | __...... | 3 | 75 |
| MIMAT0007568 | gga-miR-1681 | 1 | __...... | 6 | 75 |
| MIMAT0007392 | gma-miR1530 | 3 | __...... | 8 | 75 |
| MIMAT0006062 | odi-miR-1502 | 6 | ......__ | 1 | 75 |
| MIMAT0006034 | odi-miR-1482 | 7 | ......__ | 2 | 75 |
| MIMAT0006001 | ptc-miR1444c | 1 | __...... | 6 | 75 |
| MIMAT0006000 | ptc-miR1444b | 1 | __...... | 6 | 75 |
| MIMAT0007063 | oan-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0006957 | oan-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0005788 | hsa-miR-513b-5p | 1 | __...... | 6 | 75 |
| MIMAT0005786 | pbi-miR-513c | 1 | __...... | 6 | 75 |
| MIMAT0005785 | pbi-miR-513b | 1 | __...... | 6 | 75 |
| MIMAT0005784 | pbi-miR-513a | 1 | __...... | 6 | 75 |
| MIMAT0005777 | ptr-miR-513b | 1 | __...... | 6 | 75 |
| MIMAT0005776 | ptr-miR-513a | 1 | __...... | 6 | 75 |
| MIMAT0005768 | mml-miR-513a | 1 | __...... | 6 | 75 |
| MIMAT0005767 | mml-miR-513b | 1 | __...... | 6 | 75 |
| MIMAT0005760 | ssy-miR-513a | 1 | __...... | 6 | 75 |
| MIMAT0005759 | ssy-miR-513b | 1 | __...... | 6 | 75 |
| MIMAT0005749 | age-miR-513d | 1 | __...... | 6 | 75 |
| MIMAT0005748 | age-miR-513a | 1 | __...... | 6 | 75 |
| MIMAT0005746 | age-miR-513b | 1 | __...... | 6 | 75 |
| MIMAT0005283 | rno-miR-872-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020846 | dme-miR-954-3p | 1 | __...... | 6 | 75 |
| MIMAT0004951 | hsa-miR-887-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004935 | mmu-miR-872-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004177 | mdo-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0004174 | mdo-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0026660 | mdo-miR-124a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012535 | bta-miR-345-3p | 8 | ......__ | 3 | 75 |
| MIMAT0003675 | xtr-miR-27c | 1 | __...... | 6 | 75 |
| MIMAT0003571 | xtr-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0003570 | xtr-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0003546 | bta-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0003532 | bta-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0003078 | tni-miR-27c | 1 | __...... | 6 | 75 |
| MIMAT0003077 | fru-miR-27c | 1 | __...... | 6 | 75 |
| MIMAT0003068 | tni-miR-27e | 1 | __...... | 6 | 75 |
| MIMAT0003067 | fru-miR-27e | 1 | __...... | 6 | 75 |
| MIMAT0002952 | tni-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0002951 | fru-miR-27b | 1 | __...... | 6 | 75 |
| MIMAT0002877 | hsa-miR-513a-5p | 1 | __...... | 6 | 75 |
| MIMAT0002757 | mne-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002755 | sla-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002753 | mml-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0002750 | ptr-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002748 | ppy-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002746 | lca-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002744 | ppa-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002742 | age-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002739 | ggo-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0002148 | ssc-miR-27a | 1 | __...... | 6 | 75 |
| MIMAT0001800 | dre-miR-27e | 1 | __...... | 6 | 75 |
| MIMAT0001799 | dre-miR-27d | 1 | __...... | 6 | 75 |
| MIMAT0001798 | dre-miR-27c-3p | 1 | __...... | 6 | 75 |
| MIMAT0001797 | dre-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0001796 | dre-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0001187 | gga-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0000799 | rno-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0000798 | rno-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0000605 | mmu-miR-350-3p | 1 | __...... | 6 | 75 |
| MIMAT0000604 | rno-miR-350 | 1 | __...... | 6 | 75 |
| MIMAT0004656 | mmu-miR-345-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000537 | mmu-miR-27a-3p | 1 | __...... | 6 | 75 |
| MIMAT0004593 | hsa-miR-130a-5p | 1 | __...... | 6 | 75 |
| MIMAT0000419 | hsa-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0016989 | mmu-miR-146a-3p | 8 | __...... | 3 | 75 |
| MIMAT0000126 | mmu-miR-27b-3p | 1 | __...... | 6 | 75 |
| MIMAT0000084 | hsa-miR-27a-3p | 1 | __...... | 6 | 75 |
