| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agttgtt | 7 | ||
| MIMAT0031672 | bbe-miR-34b-3p | 7 | ....... | 1 | 100 |
| MIMAT0023070 | tur-miR-210-5p | 1 | ....... | 7 | 100 |
| MIMAT0018732 | tca-miR-3843-5p | 1 | ....... | 7 | 100 |
| MIMAT0017956 | ssc-miR-382 | 2 | ....... | 8 | 100 |
| MIMAT0015591 | bmo-miR-2733i-5p | 1 | ....... | 7 | 100 |
| MIMAT0012164 | sme-miR-2173-5p | 7 | ....... | 1 | 100 |
| MIMAT0010002 | bfl-miR-34b-3p | 7 | ....... | 1 | 100 |
| MIMAT0037130 | ata-miR5168-5p | 3 | _...... | 8 | 85 |
| MIMAT0036825 | oha-miR-21-3p | 6 | _...... | 1 | 85 |
| MIMAT0036200 | chi-miR-382-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035693 | bra-miR9567-5p | 8 | _...... | 3 | 85 |
| MIMAT0034546 | eca-miR-9006 | 2 | _...... | 7 | 85 |
| MIMAT0033606 | sma-miR-8448-5p | 8 | _...... | 3 | 85 |
| MIMAT0033215 | ppc-miR-8335-3p | 1 | _...... | 6 | 85 |
| MIMAT0032617 | ssa-miR-338a-4-5p | 6 | _...... | 1 | 85 |
| MIMAT0032532 | ssa-miR-219c-2-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030231 | bdi-miR7745-3p | 3 | _...... | 8 | 85 |
| MIMAT0032230 | lva-miR-2009-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032183 | pmi-miR-2009-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029475 | ipu-miR-219b | 3 | ......_ | 8 | 85 |
| MIMAT0029031 | gga-miR-7438-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028868 | mdo-miR-7388a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028690 | mdo-miR-1805-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028279 | mml-miR-4703-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026423 | sbi-miR5568d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026345 | bma-miR-5847 | 6 | _...... | 1 | 85 |
| MIMAT0027841 | mmu-miR-6969-3p | 2 | _...... | 7 | 85 |
| MIMAT0025601 | gga-miR-6548-5p | 6 | _...... | 1 | 85 |
| MIMAT0025447 | pol-miR-219-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024981 | hme-miR-3327 | 6 | _...... | 1 | 85 |
| MIMAT0024594 | bta-miR-6122-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023947 | cgr-miR-382 | 3 | ......_ | 8 | 85 |
| MIMAT0022579 | ola-miR-338-5p | 6 | _...... | 1 | 85 |
| MIMAT0022118 | osa-miR5485 | 8 | ......_ | 3 | 85 |
| MIMAT0022076 | aca-miR-5452-3p | 7 | _...... | 2 | 85 |
| MIMAT0022073 | aca-miR-5408b | 6 | ......_ | 1 | 85 |
| MIMAT0021866 | aca-miR-21-3p | 7 | _...... | 2 | 85 |
| MIMAT0021807 | aca-miR-1805-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021316 | mtr-miR5277 | 3 | _...... | 8 | 85 |
| MIMAT0021092 | osa-miR5147 | 6 | ......_ | 1 | 85 |
| MIMAT0022741 | hsa-miR-3529-3p | 6 | _...... | 1 | 85 |
| MIMAT0019306 | oar-miR-382-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018327 | gma-miR4408 | 7 | _...... | 2 | 85 |
| MIMAT0018322 | gma-miR1520p | 3 | _...... | 8 | 85 |
| MIMAT0018234 | gma-miR4364b | 7 | _...... | 2 | 85 |
| MIMAT0016704 | cin-miR-4114-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016617 | cin-miR-4064-3p | 6 | _...... | 1 | 85 |
| MIMAT0016538 | cin-miR-4023-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016356 | gso-miR1510a | 2 | _...... | 7 | 85 |
| MIMAT0016355 | gso-miR1510b | 2 | _...... | 7 | 85 |
| MIMAT0015996 | ppy-miR-549 | 8 | ......_ | 3 | 85 |
| MIMAT0015872 | ppy-miR-382 | 3 | ......_ | 8 | 85 |
| MIMAT0017704 | aly-miR3436-3p | 7 | _...... | 2 | 85 |
| MIMAT0017600 | aly-miR822-3p | 8 | _...... | 3 | 85 |
| MIMAT0015514 | bmo-miR-3327-5p | 6 | _...... | 1 | 85 |
| MIMAT0014889 | mmu-miR-669p-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014636 | tgu-miR-21-3p | 6 | _...... | 1 | 85 |
| MIMAT0014620 | tgu-miR-1805-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016946 | rlcv-miR-rL1-23-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014051 | osa-miR2920 | 7 | _...... | 2 | 85 |
| MIMAT0013150 | eca-miR-382 | 3 | ......_ | 8 | 85 |
| MIMAT0020912 | dme-miR-2491-3p | 7 | _...... | 2 | 85 |
| MIMAT0011934 | bta-miR-2325c | 2 | _...... | 7 | 85 |
| MIMAT0011927 | bta-miR-2325b | 3 | _...... | 8 | 85 |
| MIMAT0011680 | ppc-miR-2256 | 2 | _...... | 7 | 85 |
| MIMAT0010131 | ebv-miR-BART21-3p | 3 | ......_ | 8 | 85 |
| MIMAT0010082 | gma-miR1510b-3p | 2 | _...... | 7 | 85 |
| MIMAT0010030 | mtr-miR1507-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009750 | spu-miR-2009 | 3 | ......_ | 8 | 85 |
| MIMAT0009418 | mmu-miR-669l-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009308 | bta-miR-382 | 3 | ......_ | 8 | 85 |
| MIMAT0008229 | ptr-miR-549 | 8 | ......_ | 3 | 85 |
| MIMAT0008134 | ptr-miR-382 | 3 | ......_ | 8 | 85 |
| MIMAT0006311 | mml-miR-382-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007699 | gga-miR-1787 | 2 | _...... | 7 | 85 |
| MIMAT0007513 | gga-miR-1814 | 3 | _...... | 8 | 85 |
| MIMAT0007368 | gma-miR1510a-3p | 3 | _...... | 8 | 85 |
| MIMAT0017327 | mmu-miR-669f-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005369 | tae-miR1134 | 7 | _...... | 2 | 85 |
| MIMAT0017299 | rno-miR-196c-3p | 8 | _...... | 3 | 85 |
| MIMAT0026643 | gga-miR-21-3p | 7 | _...... | 2 | 85 |
| MIMAT0003479 | mmu-miR-669c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003477 | mmu-miR-669a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003333 | hsa-miR-549a | 8 | ......_ | 3 | 85 |
| MIMAT0003201 | rno-miR-382-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031989 | dre-miR-219-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017159 | rno-miR-214-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000747 | mmu-miR-382-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000737 | hsa-miR-382-5p | 3 | ......_ | 8 | 85 |
