| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atagacg | 7 | ||
| MIMAT0035389 | nve-miR-9429-3p | 8 | _...... | 3 | 85 |
| MIMAT0035310 | gsa-miR-277b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033727 | pxy-miR-184 | 1 | _...... | 6 | 85 |
| MIMAT0032767 | ath-miR8169 | 1 | ......_ | 6 | 85 |
| MIMAT0030328 | bdi-miR7786-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030320 | bdi-miR7783-5p | 7 | _...... | 2 | 85 |
| MIMAT0030291 | bdi-miR7770-3p | 3 | _...... | 8 | 85 |
| MIMAT0030232 | bdi-miR7746-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027627 | hsa-miR-6863 | 1 | _...... | 6 | 85 |
| MIMAT0027253 | pgi-miR6136a.1 | 1 | _...... | 6 | 85 |
| MIMAT0022228 | mtr-miR5561-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016307 | sja-miR-3498 | 1 | _...... | 6 | 85 |
| MIMAT0016293 | sja-miR-3486-3p | 8 | ......_ | 3 | 85 |
| MIMAT0014948 | mmu-miR-3108-3p | 6 | _...... | 1 | 85 |
| MIMAT0012366 | dps-miR-2553-5p | 8 | _...... | 3 | 85 |
| MIMAT0005317 | rno-miR-463-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004758 | mmu-miR-463-3p | 3 | ......_ | 8 | 85 |
