| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atagata | 7 | ||
| MIMAT0024165 | ggo-miR-577 | 1 | ....... | 7 | 100 |
| MIMAT0016942 | rlcv-miR-rL1-19-5p | 2 | ....... | 8 | 100 |
| MIMAT0017257 | mmu-miR-701-3p | 7 | ....... | 1 | 100 |
| MIMAT0037139 | ata-miR5200-3p | 3 | _...... | 8 | 85 |
| MIMAT0037000 | tae-miR5200 | 3 | _...... | 8 | 85 |
| MIMAT0035647 | dvi-miR-975-5p | 2 | _...... | 7 | 85 |
| MIMAT0035547 | bdi-miR5200b-3p | 3 | _...... | 8 | 85 |
| MIMAT0035545 | bdi-miR5200a-3p | 3 | _...... | 8 | 85 |
| MIMAT0035501 | bdi-miR9492 | 6 | _...... | 1 | 85 |
| MIMAT0034157 | gra-miR7484f | 6 | _...... | 1 | 85 |
| MIMAT0033784 | pxy-miR-8535-3p | 1 | _...... | 6 | 85 |
| MIMAT0033699 | pxy-miR-8491 | 3 | _...... | 8 | 85 |
| MIMAT0033564 | sma-miR-8430-5p | 6 | _...... | 1 | 85 |
| MIMAT0033062 | ppc-miR-8280-3p | 8 | ......_ | 3 | 85 |
| MIMAT0032375 | ssa-miR-146b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032373 | ssa-miR-146a-3-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032372 | ssa-miR-146a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030275 | bdi-miR7764-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030098 | bdi-miR5163b-3p | 1 | _...... | 6 | 85 |
| MIMAT0029673 | cbn-miR-7631 | 1 | ......_ | 6 | 85 |
| MIMAT0028469 | mdo-miR-7251-3p | 8 | _...... | 3 | 85 |
| MIMAT0026439 | sbi-miR5568e-3p | 6 | _...... | 1 | 85 |
| MIMAT0020757 | bdi-miR5200c | 3 | _...... | 8 | 85 |
| MIMAT0020064 | sko-miR-4844 | 3 | _...... | 8 | 85 |
| MIMAT0018492 | csi-miR3951 | 1 | _...... | 6 | 85 |
| MIMAT0018366 | far-miR1122 | 1 | _...... | 6 | 85 |
| MIMAT0018350 | hsa-miR-3935 | 3 | _...... | 8 | 85 |
| MIMAT0016694 | cin-miR-4107-5p | 7 | _...... | 2 | 85 |
| MIMAT0016019 | ppy-miR-577 | 1 | _...... | 6 | 85 |
| MIMAT0015603 | bmo-miR-3399 | 6 | _...... | 1 | 85 |
| MIMAT0014785 | api-miR-3046 | 3 | ......_ | 8 | 85 |
| MIMAT0013651 | bmo-miR-2770-5p | 1 | _...... | 6 | 85 |
| MIMAT0012183 | bdi-miR1122 | 1 | _...... | 6 | 85 |
| MIMAT0011448 | cel-miR-2216-3p | 7 | _...... | 2 | 85 |
| MIMAT0008251 | ptr-miR-577 | 1 | _...... | 6 | 85 |
| MIMAT0006438 | mml-miR-577-5p | 1 | _...... | 6 | 85 |
| MIMAT0007390 | gma-miR1528 | 1 | ......_ | 6 | 85 |
| MIMAT0005357 | tae-miR1122a | 1 | _...... | 6 | 85 |
| MIMAT0020874 | dme-miR-977-5p | 1 | _...... | 6 | 85 |
| MIMAT0004932 | mmu-miR-878-5p | 6 | _...... | 1 | 85 |
| MIMAT0003714 | ebv-miR-BART16 | 2 | _...... | 7 | 85 |
| MIMAT0003242 | hsa-miR-577 | 1 | _...... | 6 | 85 |
