| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcacgaa | 8 | ||
| MIMAT0015307 | bmo-miR-2843-2-3p | 8 | ........ | 1 | 100 |
| MIMAT0034613 | eca-miR-9068 | 8 | ......._ | 2 | 87 |
| MIMAT0034174 | gra-miR7494f | 7 | ......._ | 1 | 87 |
| MIMAT0034173 | gra-miR7494e | 7 | ......._ | 1 | 87 |
| MIMAT0033557 | sma-miR-8426-3p | 8 | ......._ | 2 | 87 |
| MIMAT0030950 | stu-miR8011b-3p | 7 | _....... | 1 | 87 |
| MIMAT0023474 | hco-miR-5967 | 8 | _....... | 2 | 87 |
| MIMAT0033870 | atr-miR8552d | 8 | ......g. | 1 | 87 |
| MIMAT0036354 | gma-miR9734 | 6 | _......_ | 1 | 75 |
| MIMAT0034378 | cfa-miR-8878 | 6 | _......_ | 1 | 75 |
| MIMAT0034128 | gra-miR7492k | 6 | ......__ | 1 | 75 |
| MIMAT0034127 | gra-miR7492j | 6 | ......__ | 1 | 75 |
| MIMAT0034126 | gra-miR7492i | 6 | ......__ | 1 | 75 |
| MIMAT0034125 | gra-miR7492h | 6 | ......__ | 1 | 75 |
| MIMAT0034124 | gra-miR7492g | 6 | ......__ | 1 | 75 |
| MIMAT0033285 | ppc-miR-8364t-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032908 | ppc-miR-8231-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030735 | prd-miR-7938-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029962 | osa-miR7695-3p | 7 | ......__ | 2 | 75 |
| MIMAT0024724 | nta-miR479b | 6 | ......__ | 1 | 75 |
| MIMAT0024723 | nta-miR479a | 6 | ......__ | 1 | 75 |
| MIMAT0024542 | cca-miR6105b | 1 | __...... | 6 | 75 |
| MIMAT0023465 | hco-miR-5961 | 3 | __...... | 8 | 75 |
| MIMAT0023455 | hco-miR-5953 | 7 | __...... | 2 | 75 |
| MIMAT0023012 | bra-miR5715 | 7 | ......__ | 2 | 75 |
| MIMAT0019523 | pma-miR-212-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018323 | gma-miR4404 | 7 | __...... | 2 | 75 |
| MIMAT0018254 | gma-miR4387c | 8 | ......__ | 3 | 75 |
| MIMAT0018612 | ame-miR-3743 | 6 | _......_ | 1 | 75 |
| MIMAT0018511 | ame-miR-989 | 6 | ......__ | 1 | 75 |
| MIMAT0016936 | bta-miR-3601 | 8 | _......_ | 3 | 75 |
| MIMAT0017762 | esi-miR3460-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015578 | bmo-miR-3383-3p | 2 | __...... | 7 | 75 |
| MIMAT0015415 | bmo-miR-3233 | 8 | __...... | 3 | 75 |
| MIMAT0014338 | ghr-miR479 | 6 | ......__ | 1 | 75 |
| MIMAT0013965 | bhv1-miR-B4 | 8 | ......__ | 3 | 75 |
| MIMAT0011712 | ppc-miR-2249 | 1 | __...... | 6 | 75 |
| MIMAT0032051 | dvi-miR-263a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026901 | mml-miR-592-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026779 | gga-miR-1703-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006947 | oan-miR-1354-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005557 | mcmv-miR-m108-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005066 | ppt-miR536f | 6 | __...... | 1 | 75 |
| MIMAT0005065 | ppt-miR536e | 6 | __...... | 1 | 75 |
| MIMAT0005064 | ppt-miR536d | 6 | __...... | 1 | 75 |
| MIMAT0004378 | ppt-miR536b | 6 | __...... | 1 | 75 |
| MIMAT0020353 | cel-miR-795-3p | 8 | _......_ | 3 | 75 |
| MIMAT0015230 | bmo-miR-263a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017234 | mmu-miR-592-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003144 | ppt-miR536a | 6 | __...... | 1 | 75 |
| MIMAT0020799 | dme-miR-263a-3p | 6 | ......__ | 1 | 75 |
