| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atccagtc | 8 | ||
| MIMAT0004455 | mdv2-miR-M16-5p | 1 | ........ | 8 | 100 |
| MIMAT0037245 | ata-miR319-3p | 7 | ......._ | 1 | 87 |
| MIMAT0036228 | chi-miR-432-3p | 7 | ......._ | 1 | 87 |
| MIMAT0035477 | sly-miR9479-5p | 1 | _....... | 7 | 87 |
| MIMAT0034710 | eca-miR-8908h | 2 | ......._ | 8 | 87 |
| MIMAT0034440 | eca-miR-8912 | 2 | _....... | 8 | 87 |
| MIMAT0033036 | ppc-miR-8271-3p | 8 | ......._ | 2 | 87 |
| MIMAT0030537 | prd-miR-7940c-3p | 8 | _....... | 2 | 87 |
| MIMAT0027794 | mmu-miR-6947-5p | 2 | ......._ | 8 | 87 |
| MIMAT0024621 | mml-miR-378j | 7 | ......._ | 1 | 87 |
| MIMAT0024612 | hsa-miR-378j | 7 | ......._ | 1 | 87 |
| MIMAT0024602 | ptr-miR-378j | 7 | ......._ | 1 | 87 |
| MIMAT0021564 | asu-miR-44b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0021127 | hsa-miR-5195-3p | 1 | ......._ | 7 | 87 |
| MIMAT0019663 | pma-miR-4629 | 8 | _....... | 2 | 87 |
| MIMAT0018074 | hsa-miR-3654 | 7 | _....... | 1 | 87 |
| MIMAT0014870 | mmu-miR-3081-5p | 7 | _....... | 1 | 87 |
| MIMAT0011807 | bta-miR-2299-5p | 7 | ......._ | 1 | 87 |
| MIMAT0005894 | hsa-miR-1243 | 8 | ......._ | 2 | 87 |
| MIMAT0020915 | osa-miR319a-3p | 7 | ......._ | 1 | 87 |
| MIMAT0017034 | rno-miR-336-3p | 7 | ......._ | 1 | 87 |
| MIMAT0037040 | ssc-miR-9822-3p | 8 | ......g. | 1 | 87 |
| MIMAT0037039 | ssc-miR-9821-5p | 8 | ......g. | 1 | 87 |
| MIMAT0024802 | hvu-miR6179 | 1 | .a...... | 8 | 87 |
| MIMAT0037082 | ssc-miR-378b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036727 | oha-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036533 | tch-miR-378a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036386 | gma-miR9755 | 3 | ......__ | 8 | 75 |
| MIMAT0036194 | chi-miR-378-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035967 | chi-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035366 | bol-miR9411 | 7 | _......_ | 2 | 75 |
| MIMAT0035125 | efu-miR-9350 | 1 | __...... | 6 | 75 |
| MIMAT0035122 | efu-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0034917 | efu-miR-9279a | 8 | ......__ | 3 | 75 |
| MIMAT0034834 | efu-miR-9230b | 1 | _......_ | 6 | 75 |
| MIMAT0034813 | efu-miR-378 | 7 | _......_ | 2 | 75 |
| MIMAT0034808 | efu-miR-9216 | 7 | ......__ | 2 | 75 |
| MIMAT0034769 | efu-miR-9189e | 7 | __...... | 2 | 75 |
| MIMAT0034722 | eca-miR-9146 | 8 | ......__ | 3 | 75 |
| MIMAT0034439 | eca-miR-8911 | 7 | ......__ | 2 | 75 |
| MIMAT0033603 | sma-miR-8446-3p | 1 | _......_ | 6 | 75 |
| MIMAT0033555 | sma-miR-8425-3p | 8 | __...... | 3 | 75 |
| MIMAT0033319 | str-miR-7880e-5p | 8 | __...... | 3 | 75 |
| MIMAT0033117 | ppc-miR-8300-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032815 | cel-miR-8201-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032656 | ssa-miR-462b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032654 | ssa-miR-462a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032407 | ssa-miR-16a-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032369 | ssa-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031845 | cpa-miR8148 | 7 | __...... | 2 | 75 |
| MIMAT0030784 | prd-miR-44-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030560 | prd-miR-58-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029874 | mmu-miR-7680-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029422 | ipu-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0028836 | mdo-miR-7386b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028815 | mdo-miR-7379-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028710 | mdo-miR-7349-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028665 | mdo-miR-873-3p | 7 | __...... | 2 | 75 |
| MIMAT0028545 | mdo-miR-7262b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028506 | mdo-miR-7268-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028505 | mdo-miR-7267-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027822 | mmu-miR-6961-5p | 7 | __...... | 2 | 75 |
| MIMAT0027580 | hsa-miR-6839-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025817 | gga-miR-6707-5p | 6 | _......_ | 1 | 75 |
| MIMAT0025786 | gga-miR-6681-5p | 7 | ......__ | 2 | 75 |
| MIMAT0025706 | gga-miR-6611-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025551 | bta-miR-378c | 6 | _......_ | 1 | 75 |
| MIMAT0025404 | tgu-miR-1756 | 1 | _......_ | 6 | 75 |
| MIMAT0025288 | hbr-miR408a | 8 | __...... | 3 | 75 |
| MIMAT0025138 | mmu-miR-378c | 6 | _......_ | 1 | 75 |
| MIMAT0025105 | mmu-miR-145b | 2 | _......_ | 7 | 75 |
| MIMAT0024620 | mml-miR-6128 | 6 | _......_ | 1 | 75 |
| MIMAT0024611 | hsa-miR-6128 | 6 | _......_ | 1 | 75 |
| MIMAT0024601 | ptr-miR-6128 | 6 | _......_ | 1 | 75 |
| MIMAT0024409 | ppy-miR-378e | 6 | _......_ | 1 | 75 |
| MIMAT0024386 | ppy-miR-4667 | 7 | __...... | 2 | 75 |
| MIMAT0024384 | ppy-miR-4515 | 8 | __...... | 3 | 75 |
| MIMAT0024376 | ppy-miR-4782 | 8 | ......__ | 3 | 75 |
| MIMAT0024364 | ppy-miR-378b | 6 | _......_ | 1 | 75 |
| MIMAT0024360 | ppy-miR-378d | 6 | _......_ | 1 | 75 |
| MIMAT0024338 | mml-miR-1243-3p | 8 | _......_ | 3 | 75 |
| MIMAT0024313 | mml-miR-378d | 6 | _......_ | 1 | 75 |
| MIMAT0024303 | ggo-miR-378e | 6 | _......_ | 1 | 75 |
| MIMAT0024242 | ggo-miR-378b | 6 | _......_ | 1 | 75 |
| MIMAT0024233 | ggo-miR-1287 | 8 | ......__ | 3 | 75 |
| MIMAT0024103 | ggo-miR-378a | 6 | _......_ | 1 | 75 |
| MIMAT0024067 | ptr-miR-378e | 6 | _......_ | 1 | 75 |
| MIMAT0024044 | ptr-miR-378b | 6 | _......_ | 1 | 75 |
| MIMAT0023944 | cgr-miR-378-3p | 6 | _......_ | 1 | 75 |
| MIMAT0022669 | ola-miR-145 | 1 | _......_ | 6 | 75 |
| MIMAT0022500 | hsa-miR-5706 | 8 | ......__ | 3 | 75 |
| MIMAT0022287 | hsa-miR-5586-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021802 | aca-miR-16b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021773 | aca-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021673 | gma-miR1512b | 8 | _......_ | 3 | 75 |
| MIMAT0021604 | gma-miR862b | 7 | ......__ | 2 | 75 |
| MIMAT0021455 | asu-miR-44a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021114 | osa-miR5161 | 7 | ......__ | 2 | 75 |
| MIMAT0020634 | mmu-miR-5124a | 3 | _......_ | 8 | 75 |
| MIMAT0020622 | mmu-miR-5114 | 6 | _......_ | 1 | 75 |
| MIMAT0021004 | gma-miR862a | 8 | ......__ | 3 | 75 |
| MIMAT0020024 | sko-miR-2007-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019944 | hsa-miR-4782-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019818 | hsa-miR-4712-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019540 | pma-miR-338b | 1 | _......_ | 6 | 75 |
| MIMAT0019476 | pma-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019382 | pma-miR-16-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019074 | hsa-miR-378i | 6 | _......_ | 1 | 75 |
| MIMAT0019052 | hsa-miR-4515 | 8 | __...... | 3 | 75 |
| MIMAT0018987 | hsa-miR-4463 | 8 | __...... | 3 | 75 |
| MIMAT0018984 | hsa-miR-378h | 6 | _......_ | 1 | 75 |
| MIMAT0018932 | hsa-miR-378f | 6 | _......_ | 1 | 75 |
| MIMAT0018927 | hsa-miR-378e | 6 | _......_ | 1 | 75 |
| MIMAT0019228 | hsa-miR-3925-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018505 | cre-miR1161b | 7 | _......_ | 2 | 75 |
| MIMAT0016847 | hsa-miR-378c | 6 | _......_ | 1 | 75 |
| MIMAT0017831 | rno-miR-3561-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016239 | ppy-miR-1910 | 1 | __...... | 6 | 75 |
| MIMAT0016210 | ppy-miR-1287 | 8 | ......__ | 3 | 75 |
| MIMAT0016109 | ppy-miR-770-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015881 | ppy-miR-422a | 6 | _......_ | 1 | 75 |
| MIMAT0015868 | ppy-miR-378a | 6 | _......_ | 1 | 75 |
| MIMAT0015600 | bmo-miR-3396 | 1 | _......_ | 6 | 75 |
| MIMAT0014999 | hsa-miR-378b | 6 | _......_ | 1 | 75 |
| MIMAT0014763 | api-miR-3027 | 1 | __...... | 6 | 75 |
| MIMAT0014750 | api-miR-3015a | 8 | _......_ | 3 | 75 |
| MIMAT0019194 | rlcv-miR-rL1-29-5p | 1 | __...... | 6 | 75 |
| MIMAT0013868 | ssc-miR-378 | 6 | _......_ | 1 | 75 |
| MIMAT0013068 | eca-miR-378 | 6 | _......_ | 1 | 75 |
| MIMAT0013064 | eca-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0013549 | cte-miR-2692 | 1 | __...... | 6 | 75 |
| MIMAT0012424 | dsi-miR-978a | 3 | _......_ | 8 | 75 |
| MIMAT0011873 | bta-miR-2339 | 8 | _......_ | 3 | 75 |
| MIMAT0011587 | crm-miR-44-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011577 | crm-miR-45-5p | 6 | ......__ | 1 | 75 |
| MIMAT0009971 | bta-miR-1287 | 8 | ......__ | 3 | 75 |
| MIMAT0009863 | cfa-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0009305 | bta-miR-378 | 6 | _......_ | 1 | 75 |
| MIMAT0008322 | ptr-miR-770 | 1 | _......_ | 6 | 75 |
| MIMAT0008141 | ptr-miR-422a | 6 | _......_ | 1 | 75 |
| MIMAT0008130 | ptr-miR-378a | 6 | _......_ | 1 | 75 |
| MIMAT0008051 | ptr-miR-1825 | 1 | _......_ | 6 | 75 |
| MIMAT0007902 | bmo-miR-184-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007884 | hsa-miR-1910-5p | 1 | __...... | 6 | 75 |
| MIMAT0007866 | mmu-miR-1905 | 3 | __...... | 8 | 75 |
| MIMAT0006768 | cel-miR-1828 | 6 | _......_ | 1 | 75 |
| MIMAT0006765 | hsa-miR-1825 | 1 | _......_ | 6 | 75 |
| MIMAT0006706 | cfa-miR-1843 | 6 | _......_ | 1 | 75 |
| MIMAT0006683 | cfa-miR-378 | 6 | _......_ | 1 | 75 |
| MIMAT0006590 | cel-miR-1823-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006514 | mml-miR-770-5p | 1 | _......_ | 6 | 75 |
| MIMAT0006320 | mml-miR-422a | 6 | _......_ | 1 | 75 |
| MIMAT0006307 | mml-miR-378a | 6 | _......_ | 1 | 75 |
| MIMAT0007663 | gga-miR-1756a | 1 | _......_ | 6 | 75 |
| MIMAT0007635 | gga-miR-1733 | 6 | ......__ | 1 | 75 |
| MIMAT0007273 | oan-miR-873-3p | 8 | __...... | 3 | 75 |
| MIMAT0007141 | oan-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006879 | oan-miR-1422a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005878 | hsa-miR-1287-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005426 | cre-miR1169-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005413 | cre-miR1161a | 7 | _......_ | 2 | 75 |
| MIMAT0017289 | rno-miR-871-3p | 7 | __...... | 2 | 75 |
| MIMAT0005494 | dme-miR-978-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017265 | mmu-miR-871-3p | 7 | __...... | 2 | 75 |
| MIMAT0004116 | mdo-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012124 | sme-miR-750-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003948 | hsa-miR-770-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003688 | xtr-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0003542 | bta-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0018926 | hsa-miR-378d | 6 | _......_ | 1 | 75 |
| MIMAT0004816 | ebv-miR-BART9-5p | 7 | _......_ | 2 | 75 |
| MIMAT0003379 | rno-miR-378a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0002815 | hsa-miR-432-3p | 6 | ......__ | 1 | 75 |
| MIMAT0002270 | mne-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0002269 | ppy-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0002268 | ggo-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0002267 | ptr-miR-145 | 2 | _......_ | 7 | 75 |
| MIMAT0002266 | mml-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0002123 | ssc-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032004 | dre-miR-457b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0001842 | dre-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001339 | hsa-miR-422a | 6 | _......_ | 1 | 75 |
| MIMAT0000851 | rno-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003151 | mmu-miR-378a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000732 | hsa-miR-378a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000437 | hsa-miR-145-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000157 | mmu-miR-145a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015102 | cel-miR-60-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020772 | cel-miR-45-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020771 | cel-miR-44-5p | 6 | ......__ | 1 | 75 |
