| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atccatgc | 8 | ||
| MIMAT0028197 | dev-miR-D21-3p | 1 | ........ | 8 | 100 |
| MIMAT0036936 | oha-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0035326 | gsa-miR-9391-5p | 1 | ......._ | 7 | 87 |
| MIMAT0034731 | eca-miR-9155 | 1 | _....... | 7 | 87 |
| MIMAT0033085 | ppc-miR-8288-5p | 7 | _....... | 1 | 87 |
| MIMAT0028846 | mdo-miR-7386j-5p | 8 | ......._ | 2 | 87 |
| MIMAT0022276 | hsa-miR-5581-3p | 2 | _....... | 8 | 87 |
| MIMAT0021976 | aca-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0021546 | asu-miR-36f-5p | 8 | ......._ | 2 | 87 |
| MIMAT0017959 | ssc-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0015909 | ppy-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0026996 | tgu-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0012944 | eca-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0017356 | rno-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0010028 | mtr-miR1510b-5p | 8 | ......._ | 2 | 87 |
| MIMAT0006350 | mml-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0005985 | mdv1-miR-M13 | 7 | _....... | 1 | 87 |
| MIMAT0006810 | oan-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0017261 | mmu-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0026633 | gga-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0004764 | hsa-miR-490-5p | 8 | ......._ | 2 | 87 |
| MIMAT0036364 | gma-miR9744 | 7 | ......__ | 2 | 75 |
| MIMAT0035862 | bra-miR6032-5p | 8 | _......_ | 3 | 75 |
| MIMAT0034858 | efu-miR-9243a | 3 | _......_ | 8 | 75 |
| MIMAT0034494 | eca-miR-8960 | 1 | __...... | 6 | 75 |
| MIMAT0034412 | cfa-miR-8902 | 2 | ......__ | 7 | 75 |
| MIMAT0034377 | cfa-miR-8877 | 1 | __...... | 6 | 75 |
| MIMAT0034204 | gra-miR8768 | 2 | _......_ | 7 | 75 |
| MIMAT0034168 | gra-miR7494d | 7 | _......_ | 2 | 75 |
| MIMAT0033972 | esi-miR8623b | 6 | _......_ | 1 | 75 |
| MIMAT0033885 | atr-miR8596 | 8 | ......__ | 3 | 75 |
| MIMAT0033883 | atr-miR8594.2 | 7 | ......__ | 2 | 75 |
| MIMAT0033716 | pxy-miR-8504 | 3 | ......__ | 8 | 75 |
| MIMAT0033657 | sma-miR-8469-5p | 7 | __...... | 2 | 75 |
| MIMAT0033428 | str-miR-8384-5p | 6 | ......__ | 1 | 75 |
| MIMAT0033368 | str-miR-7880n-5p | 8 | ......__ | 3 | 75 |
| MIMAT0033283 | ppc-miR-8360-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032771 | ath-miR8172 | 6 | ......__ | 1 | 75 |
| MIMAT0032377 | ssa-miR-146d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030479 | prd-miR-72-3p | 2 | __...... | 7 | 75 |
| MIMAT0030157 | bdi-miR7717a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0029915 | mdo-miR-7301-3p | 1 | __...... | 6 | 75 |
| MIMAT0029574 | ipu-miR-7575 | 6 | __...... | 1 | 75 |
| MIMAT0029120 | gga-miR-7483-5p | 6 | __...... | 1 | 75 |
| MIMAT0028991 | oan-miR-7420-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028862 | mdo-miR-7386m-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028696 | mdo-miR-7343-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028521 | mdo-miR-7273-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028432 | mmu-miR-7232-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028311 | mml-miR-7182-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028212 | hsa-miR-7151-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026426 | sbi-miR2118-5p | 7 | __...... | 2 | 75 |
| MIMAT0027712 | mmu-miR-6906-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027645 | hsa-miR-6872-3p | 2 | __...... | 7 | 75 |
| MIMAT0025759 | gga-miR-6658-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025215 | ptc-miR6425d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025215 | ptc-miR6425d-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025208 | ptc-miR6425c-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025208 | ptc-miR6425c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025199 | ptc-miR6425b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025199 | ptc-miR6425b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025191 | ptc-miR6425a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025191 | ptc-miR6425a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0024567 | bta-miR-1246 | 7 | ......__ | 2 | 75 |
| MIMAT0023592 | sly-miR6023 | 2 | _......_ | 7 | 75 |
| MIMAT0023591 | stu-miR6023 | 2 | _......_ | 7 | 75 |
| MIMAT0022466 | gma-miR5678 | 2 | _......_ | 7 | 75 |
| MIMAT0022453 | gma-miR5671a | 6 | _......_ | 1 | 75 |
| MIMAT0032130 | gma-miR5667-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022391 | ath-miR5020c | 8 | __...... | 3 | 75 |
| MIMAT0021254 | mtr-miR5256 | 8 | ......__ | 3 | 75 |
| MIMAT0021232 | mtr-miR482-5p | 7 | __...... | 2 | 75 |
| MIMAT0021177 | mtr-miR5219 | 7 | _......_ | 2 | 75 |
| MIMAT0021141 | mtr-miR5208c | 8 | _......_ | 3 | 75 |
| MIMAT0021140 | mtr-miR5208b | 8 | _......_ | 3 | 75 |
| MIMAT0021139 | mtr-miR5208a | 8 | _......_ | 3 | 75 |
| MIMAT0020730 | bdi-miR5181a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021046 | hsa-miR-5011-3p | 8 | __...... | 3 | 75 |
| MIMAT0019982 | hsa-miR-4802-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019826 | hsa-miR-4716-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018388 | ngi-miR-281 | 8 | _......_ | 3 | 75 |
| MIMAT0018005 | hsa-miR-3622b-5p | 8 | __...... | 3 | 75 |
| MIMAT0016810 | cin-miR-4192-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017740 | ath-miR774b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017652 | aly-miR861-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015569 | bmo-miR-3378-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015565 | bmo-miR-3375-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015511 | bmo-miR-3324 | 1 | _......_ | 6 | 75 |
| MIMAT0015384 | bmo-miR-3206 | 2 | ......__ | 7 | 75 |
| MIMAT0015000 | hsa-miR-3134 | 8 | ......__ | 3 | 75 |
| MIMAT0014949 | mmu-miR-3109-5p | 7 | ......__ | 2 | 75 |
| MIMAT0014465 | tgu-miR-146a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012317 | dps-miR-2527 | 8 | ......__ | 3 | 75 |
| MIMAT0011945 | bta-miR-2392 | 6 | ......__ | 1 | 75 |
| MIMAT0011625 | crm-miR-2228 | 3 | ......__ | 8 | 75 |
| MIMAT0009753 | aqu-miR-2021-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032082 | dvi-miR-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0007972 | ptr-miR-1246 | 7 | ......__ | 2 | 75 |
| MIMAT0007828 | osa-miR1874-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007772 | osa-miR1852 | 8 | ......__ | 3 | 75 |
| MIMAT0007736 | gga-miR-146c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007495 | gga-miR-1626-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007480 | gga-miR-1614-5p | 7 | __...... | 2 | 75 |
| MIMAT0009175 | oan-miR-1422b-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0006891 | oan-miR-1422c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0006885 | oan-miR-1422b-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005913 | hsa-miR-1261 | 6 | ......__ | 1 | 75 |
| MIMAT0005898 | hsa-miR-1246 | 7 | ......__ | 2 | 75 |
| MIMAT0005841 | mmu-miR-669h-5p | 8 | __...... | 3 | 75 |
| MIMAT0004306 | ath-miR861-3p | 7 | ......__ | 2 | 75 |
| MIMAT0012127 | sme-miR-756-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003149 | ppt-miR538c | 8 | __...... | 3 | 75 |
| MIMAT0003148 | ppt-miR538b | 8 | __...... | 3 | 75 |
| MIMAT0003147 | ppt-miR538a | 8 | __...... | 3 | 75 |
| MIMAT0020779 | dme-miR-1-5p | 1 | __...... | 6 | 75 |
| MIMAT0015099 | cel-miR-51-3p | 6 | _......_ | 1 | 75 |
