| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcgagga | 8 | ||
| MIMAT0025312 | prv-miR-LLT9 | 1 | ........ | 8 | 100 |
| MIMAT0035981 | chi-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0033047 | ppc-miR-8274-5p | 1 | _....... | 7 | 87 |
| MIMAT0024107 | ggo-miR-151a | 1 | _....... | 7 | 87 |
| MIMAT0023782 | cgr-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0021182 | mtr-miR5224a | 1 | _....... | 7 | 87 |
| MIMAT0016296 | sja-miR-3487 | 7 | _....... | 1 | 87 |
| MIMAT0015775 | ppy-miR-151a-5p | 1 | _....... | 7 | 87 |
| MIMAT0014996 | hsa-miR-3131 | 1 | _....... | 7 | 87 |
| MIMAT0013882 | ssc-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0013004 | eca-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0006615 | cfa-miR-151 | 1 | _....... | 7 | 87 |
| MIMAT0006212 | mml-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0003523 | bta-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0010214 | hsa-miR-151b | 1 | _....... | 7 | 87 |
| MIMAT0001567 | mghv-miR-M1-4-5p | 1 | _....... | 7 | 87 |
| MIMAT0004697 | hsa-miR-151a-5p | 1 | _....... | 7 | 87 |
| MIMAT0000613 | rno-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0004536 | mmu-miR-151-5p | 1 | _....... | 7 | 87 |
| MIMAT0034281 | cfa-miR-8791a | 8 | .c...... | 1 | 87 |
| MIMAT0031704 | bbe-miR-4887-5p | 8 | ......a. | 1 | 87 |
| MIMAT0030313 | bdi-miR7779-3p | 8 | ......a. | 1 | 87 |
| MIMAT0020474 | bfl-miR-4887 | 8 | ......a. | 1 | 87 |
| MIMAT0018807 | tca-miR-252b-3p | 8 | .c...... | 1 | 87 |
| MIMAT0013514 | mtr-miR2680e | 8 | .c...... | 1 | 87 |
| MIMAT0013513 | mtr-miR2680d | 8 | .c...... | 1 | 87 |
| MIMAT0013512 | mtr-miR2680c | 8 | .c...... | 1 | 87 |
| MIMAT0013511 | mtr-miR2680b | 8 | .c...... | 1 | 87 |
| MIMAT0013510 | mtr-miR2680a | 8 | .c...... | 1 | 87 |
| MIMAT0011740 | osa-miR2118a | 8 | ......a. | 1 | 87 |
| MIMAT0009789 | nve-miR-2033-3p | 8 | .a...... | 1 | 87 |
| MIMAT0037266 | ame-miR-9864 | 3 | _......_ | 8 | 75 |
| MIMAT0034476 | eca-miR-8947 | 1 | __...... | 6 | 75 |
| MIMAT0032928 | ppc-miR-8237-5p | 7 | _......_ | 2 | 75 |
| MIMAT0032842 | cel-miR-8211-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031385 | aly-miR2111c-3p | 7 | __...... | 2 | 75 |
| MIMAT0030199 | bdi-miR7732-3p | 2 | ......__ | 7 | 75 |
| MIMAT0029147 | ghr-miR7500 | 1 | ......__ | 6 | 75 |
| MIMAT0028376 | mml-miR-7205-5p | 1 | _......_ | 6 | 75 |
| MIMAT0024815 | hvu-miR6190 | 1 | __...... | 6 | 75 |
| MIMAT0024810 | hvu-miR6186 | 1 | __...... | 6 | 75 |
| MIMAT0024339 | mml-miR-1304 | 2 | _......_ | 7 | 75 |
| MIMAT0023260 | osa-miR5793 | 1 | __...... | 6 | 75 |
| MIMAT0022410 | ath-miR5646 | 3 | _......_ | 8 | 75 |
| MIMAT0021351 | mtr-miR5289b | 1 | __...... | 6 | 75 |
| MIMAT0021350 | mtr-miR5289a | 1 | __...... | 6 | 75 |
| MIMAT0021142 | mtr-miR5209 | 1 | __...... | 6 | 75 |
| MIMAT0027080 | bdi-miR5172-5p | 1 | __...... | 6 | 75 |
| MIMAT0020148 | dme-miR-4941-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018477 | csi-miR477c | 8 | _......_ | 3 | 75 |
| MIMAT0018832 | tca-miR-3870-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016371 | bra-miR2111b-3p | 7 | __...... | 2 | 75 |
| MIMAT0016369 | bra-miR2111a-3p | 7 | __...... | 2 | 75 |
| MIMAT0016284 | sja-miR-3482-5p | 8 | __...... | 3 | 75 |
| MIMAT0016224 | ppy-miR-1304 | 2 | _......_ | 7 | 75 |
| MIMAT0016052 | ppy-miR-611 | 2 | __...... | 7 | 75 |
| MIMAT0017660 | aly-miR2111b-3p | 7 | __...... | 2 | 75 |
| MIMAT0017658 | aly-miR2111a-3p | 7 | __...... | 2 | 75 |
| MIMAT0015519 | bmo-miR-3332 | 6 | __...... | 1 | 75 |
| MIMAT0015482 | bmo-miR-3295 | 2 | ......__ | 7 | 75 |
| MIMAT0015387 | bmo-miR-3208 | 3 | _......_ | 8 | 75 |
| MIMAT0014869 | mmu-miR-3080-3p | 6 | __...... | 1 | 75 |
| MIMAT0013634 | bmo-miR-2761-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026928 | mtr-miR2111m-3p | 7 | __...... | 2 | 75 |
| MIMAT0013251 | mtr-miR2586a | 1 | __...... | 6 | 75 |
| MIMAT0011941 | bta-miR-2388-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011783 | bna-miR2111a-3p | 7 | __...... | 2 | 75 |
| MIMAT0011781 | bna-miR2111b-3p | 7 | __...... | 2 | 75 |
| MIMAT0011153 | ath-miR2111b-3p | 7 | __...... | 2 | 75 |
| MIMAT0011151 | ath-miR2111a-3p | 7 | __...... | 2 | 75 |
| MIMAT0006463 | mml-miR-611 | 2 | __...... | 7 | 75 |
| MIMAT0006063 | odi-miR-1503 | 1 | __...... | 6 | 75 |
| MIMAT0007274 | oan-miR-1417-5p | 7 | ......__ | 2 | 75 |
| MIMAT0006917 | oan-miR-1345 | 3 | __...... | 8 | 75 |
| MIMAT0005593 | hsa-miR-1238-3p | 8 | __...... | 3 | 75 |
| MIMAT0005537 | mcmv-miR-m01-3-3p | 1 | __...... | 6 | 75 |
| MIMAT0004969 | cre-miR919.1 | 2 | ......__ | 7 | 75 |
| MIMAT0003279 | hsa-miR-611 | 2 | __...... | 7 | 75 |
| MIMAT0001003 | ath-miR402 | 2 | _......_ | 7 | 75 |
| MIMAT0015116 | cel-miR-240-5p | 1 | __...... | 6 | 75 |
