| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcgggtt | 8 | ||
| MIMAT0033061 | ppc-miR-8280-5p | 8 | ........ | 1 | 100 |
| MIMAT0033057 | ppc-miR-8279-5p | 8 | ........ | 1 | 100 |
| MIMAT0032892 | ppc-miR-8225-5p | 8 | ........ | 1 | 100 |
| MIMAT0023501 | hco-miR-5987 | 8 | ........ | 1 | 100 |
| MIMAT0021433 | asu-miR-43d-5p | 8 | ........ | 1 | 100 |
| MIMAT0011701 | ppc-miR-2266 | 8 | ........ | 1 | 100 |
| MIMAT0019088 | rlcv-miR-rL1-10-5p | 1 | ........ | 8 | 100 |
| MIMAT0033824 | atr-miR8553a | 1 | ......._ | 7 | 87 |
| MIMAT0032919 | ppc-miR-8233-3p | 7 | _....... | 1 | 87 |
| MIMAT0027959 | mmu-miR-7027-3p | 1 | _....... | 7 | 87 |
| MIMAT0025530 | bta-miR-2285o | 8 | _....... | 2 | 87 |
| MIMAT0023129 | mtr-miR5749 | 2 | _....... | 8 | 87 |
| MIMAT0021470 | asu-miR-76-5p | 1 | _....... | 7 | 87 |
| MIMAT0020577 | bdi-miR5068 | 1 | ......._ | 7 | 87 |
| MIMAT0011688 | ppc-miR-2262 | 8 | ......._ | 2 | 87 |
| MIMAT0037001 | ssc-miR-9784-5p | 1 | .a...... | 8 | 87 |
| MIMAT0037220 | ata-miR2118b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0036966 | oha-miR-99b-5p | 6 | __...... | 1 | 75 |
| MIMAT0036964 | oha-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0036675 | oha-miR-125b-3p | 2 | __...... | 7 | 75 |
| MIMAT0036648 | oha-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0036563 | tch-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0036554 | tch-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0036348 | gma-miR5671b | 7 | _......_ | 2 | 75 |
| MIMAT0036312 | chi-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0036225 | chi-miR-425-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035897 | chi-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0035212 | dme-miR-9374-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035204 | dme-miR-9370-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035053 | efu-miR-125a | 2 | __...... | 7 | 75 |
| MIMAT0034944 | efu-miR-99a | 7 | __...... | 2 | 75 |
| MIMAT0034818 | efu-miR-9223c | 1 | _......_ | 6 | 75 |
| MIMAT0034749 | eca-miR-425 | 3 | ......__ | 8 | 75 |
| MIMAT0034649 | eca-miR-9102 | 2 | __...... | 7 | 75 |
| MIMAT0033765 | pxy-miR-8524-5p | 2 | __...... | 7 | 75 |
| MIMAT0033482 | str-miR-8396-5p | 1 | __...... | 6 | 75 |
| MIMAT0033432 | str-miR-8386-5p | 1 | __...... | 6 | 75 |
| MIMAT0032718 | ssa-miR-99-5p | 6 | __...... | 1 | 75 |
| MIMAT0032306 | ssa-miR-125a-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0032305 | ssa-miR-125a-3p | 2 | __...... | 7 | 75 |
| MIMAT0032277 | ssa-miR-100a-5p | 6 | __...... | 1 | 75 |
| MIMAT0031570 | bbe-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0030472 | prd-miR-7867-5p | 6 | __...... | 1 | 75 |
| MIMAT0030454 | prd-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0030064 | oar-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0032224 | lva-miR-2003-5p | 6 | __...... | 1 | 75 |
| MIMAT0032156 | pmi-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0029533 | ipu-miR-99b | 6 | __...... | 1 | 75 |
| MIMAT0029532 | ipu-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0029385 | ipu-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0026327 | ccr-miR-99 | 6 | __...... | 1 | 75 |
| MIMAT0026195 | ccr-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0025767 | gga-miR-6666-3p | 1 | _......_ | 6 | 75 |
| MIMAT0024587 | bta-miR-2285l | 8 | __...... | 3 | 75 |
| MIMAT0024438 | mse-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0024016 | cgr-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0023959 | cgr-miR-425-3p | 2 | ......__ | 7 | 75 |
| MIMAT0023726 | cgr-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0023674 | ame-miR-6050 | 2 | __...... | 7 | 75 |
| MIMAT0022800 | sha-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0022614 | ola-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0021998 | aca-miR-99b-5p | 6 | __...... | 1 | 75 |
| MIMAT0021996 | aca-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0021709 | aca-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0021576 | asu-miR-5357-5p | 7 | _......_ | 2 | 75 |
| MIMAT0021493 | asu-miR-100d-5p | 6 | __...... | 1 | 75 |
| MIMAT0021489 | asu-miR-100b-5p | 6 | __...... | 1 | 75 |
| MIMAT0021487 | asu-miR-100a-5p | 6 | __...... | 1 | 75 |
| MIMAT0021368 | mtr-miR5297 | 1 | ......__ | 6 | 75 |
| MIMAT0020652 | rgl-miR5141 | 8 | _......_ | 3 | 75 |
| MIMAT0020169 | dme-miR-4954-5p | 8 | _......_ | 3 | 75 |
| MIMAT0020164 | dme-miR-4951-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019439 | pma-miR-100b | 6 | __...... | 1 | 75 |
| MIMAT0019437 | pma-miR-100a-5p | 6 | __...... | 1 | 75 |
| MIMAT0016764 | cin-miR-4158-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016562 | cin-miR-4036-3p | 3 | __...... | 8 | 75 |
| MIMAT0017801 | rno-miR-3546 | 8 | __...... | 3 | 75 |
| MIMAT0015677 | nvi-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0015061 | hsa-miR-3181 | 1 | ......__ | 6 | 75 |
| MIMAT0014524 | tgu-miR-99-5p | 6 | __...... | 1 | 75 |
| MIMAT0014511 | tgu-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0014685 | tgu-miR-125-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0014471 | tgu-miR-425-3p | 2 | ......__ | 7 | 75 |
| MIMAT0014387 | cqu-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0014291 | aae-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0014114 | bma-miR-100c | 6 | __...... | 1 | 75 |
| MIMAT0014113 | bma-miR-100b | 6 | __...... | 1 | 75 |
| MIMAT0014112 | bma-miR-100a | 6 | __...... | 1 | 75 |
| MIMAT0013918 | ssc-miR-425-3p | 1 | ......__ | 6 | 75 |
| MIMAT0013911 | ssc-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0013896 | ssc-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0013184 | eca-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0012980 | eca-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0013648 | bmo-miR-375-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013596 | bmo-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0012683 | isc-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0012637 | dpu-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0012485 | dsi-miR-981-5p | 1 | __...... | 6 | 75 |
| MIMAT0012219 | dps-miR-981-5p | 1 | __...... | 6 | 75 |
| MIMAT0011883 | bta-miR-2348 | 2 | _......_ | 7 | 75 |
| MIMAT0011761 | zma-miR2118b | 8 | ......__ | 3 | 75 |
| MIMAT0011756 | osa-miR2118q | 8 | ......__ | 3 | 75 |
| MIMAT0011755 | osa-miR2118p | 8 | ......__ | 3 | 75 |
| MIMAT0011753 | osa-miR2118n | 8 | ......__ | 3 | 75 |
| MIMAT0011742 | osa-miR2118c | 8 | ......__ | 3 | 75 |
| MIMAT0011741 | osa-miR2118b | 8 | ......__ | 3 | 75 |
| MIMAT0011733 | ppc-miR-2274 | 6 | __...... | 1 | 75 |
| MIMAT0011726 | ppc-miR-2271 | 6 | __...... | 1 | 75 |
| MIMAT0011696 | ppc-miR-55b | 6 | __...... | 1 | 75 |
| MIMAT0011695 | ppc-miR-54 | 6 | __...... | 1 | 75 |
| MIMAT0009802 | nve-miR-2040a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009744 | spu-miR-2003-5p | 6 | __...... | 1 | 75 |
| MIMAT0009623 | sko-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0009577 | lgi-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0009524 | cte-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0009481 | bfl-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0009215 | bta-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0009059 | dya-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0009048 | dwi-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008973 | dvi-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0008872 | dsi-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008796 | dse-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008718 | dpe-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008637 | dmo-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008557 | dgr-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008488 | der-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008478 | dan-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0008369 | tca-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0006668 | cfa-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0007419 | gga-miR-1561 | 3 | __...... | 8 | 75 |
| MIMAT0007183 | oan-miR-99-5p | 6 | __...... | 1 | 75 |
| MIMAT0007155 | oan-miR-425-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007049 | oan-miR-125-3p | 2 | __...... | 7 | 75 |
| MIMAT0007046 | oan-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0005396 | cre-miR1151b-3p | 2 | __...... | 7 | 75 |
| MIMAT0017306 | rno-miR-425-3p | 1 | ......__ | 6 | 75 |
| MIMAT0020878 | dme-miR-981-5p | 1 | __...... | 6 | 75 |
| MIMAT0004420 | ame-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0004409 | rrv-miR-rR1-3 | 6 | ......__ | 1 | 75 |
| MIMAT0004153 | mdo-miR-425-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031106 | mdo-miR-125b-2-3p | 2 | __...... | 7 | 75 |
| MIMAT0004097 | mdo-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0003833 | bta-miR-425-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003682 | xtr-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0003582 | xtr-miR-99 | 6 | __...... | 1 | 75 |
| MIMAT0003537 | bta-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0003064 | tni-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0003063 | fru-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002424 | lla-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002423 | sla-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002422 | mml-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0002421 | ptr-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002420 | ppy-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002419 | ppa-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002418 | age-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002417 | ggo-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0002416 | ppa-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0002415 | mne-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0002414 | lla-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0002413 | ppy-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0002412 | ggo-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0002411 | ptr-miR-99a | 6 | __...... | 1 | 75 |
| MIMAT0002410 | mml-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0026564 | mml-miR-125b-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0031964 | dre-miR-125b-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0031963 | dre-miR-125b-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0001813 | dre-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0001812 | dre-miR-99 | 6 | __...... | 1 | 75 |
| MIMAT0001498 | aga-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0001343 | hsa-miR-425-3p | 1 | ......__ | 6 | 75 |
| MIMAT0001342 | mmu-miR-425-3p | 1 | ......__ | 6 | 75 |
| MIMAT0001228 | dps-miR-100 | 6 | __...... | 1 | 75 |
| MIMAT0001178 | gga-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0001103 | gga-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0004730 | rno-miR-125b-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0000822 | rno-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0000820 | rno-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0004669 | mmu-miR-125b-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0000655 | mmu-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0004592 | hsa-miR-125b-1-3p | 2 | __...... | 7 | 75 |
| MIMAT0000357 | dme-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0000131 | mmu-miR-99a-5p | 6 | __...... | 1 | 75 |
| MIMAT0000098 | hsa-miR-100-5p | 6 | __...... | 1 | 75 |
| MIMAT0000097 | hsa-miR-99a-5p | 6 | __...... | 1 | 75 |
