| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atctctcg | 8 | ||
| MIMAT0012720 | hvt-miR-H8 | 1 | ........ | 8 | 100 |
| MIMAT0036481 | tch-miR-6529 | 7 | ......._ | 1 | 87 |
| MIMAT0033280 | ppc-miR-8359-5p | 8 | _....... | 2 | 87 |
| MIMAT0033160 | ppc-miR-8364p-3p | 7 | _....... | 1 | 87 |
| MIMAT0033139 | ppc-miR-8364o-3p | 7 | _....... | 1 | 87 |
| MIMAT0031840 | cpa-miR8143 | 7 | ......._ | 1 | 87 |
| MIMAT0030251 | bdi-miR7754-3p | 2 | _....... | 8 | 87 |
| MIMAT0029365 | lja-miR7539 | 8 | _....... | 2 | 87 |
| MIMAT0028314 | mml-miR-6529-5p | 7 | ......._ | 1 | 87 |
| MIMAT0025565 | bta-miR-6529a | 7 | ......._ | 1 | 87 |
| MIMAT0017994 | hsa-miR-3615 | 1 | _....... | 7 | 87 |
| MIMAT0013585 | cte-miR-2716 | 7 | ......._ | 1 | 87 |
| MIMAT0005031 | cel-miR-1018 | 8 | ......._ | 2 | 87 |
| MIMAT0004236 | mmu-miR-741-3p | 8 | ......._ | 2 | 87 |
| MIMAT0036843 | oha-miR-219-2-3p | 8 | .a...... | 1 | 87 |
| MIMAT0019900 | hsa-miR-4756-3p | 8 | ......g. | 1 | 87 |
| MIMAT0036564 | tch-miR-185-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036339 | gma-miR9724 | 7 | ......__ | 2 | 75 |
| MIMAT0036063 | chi-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0035678 | bra-miR9561-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035669 | bra-miR9558-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035483 | sly-miR477-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035201 | dme-miR-9369-5p | 8 | __...... | 3 | 75 |
| MIMAT0035073 | efu-miR-185 | 8 | _......_ | 3 | 75 |
| MIMAT0034608 | eca-miR-9063 | 8 | __...... | 3 | 75 |
| MIMAT0033865 | atr-miR8581 | 7 | _......_ | 2 | 75 |
| MIMAT0033592 | sma-miR-281-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033137 | ppc-miR-8306-3p | 8 | __...... | 3 | 75 |
| MIMAT0033123 | ppc-miR-8364u-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033022 | ppc-miR-8268-5p | 3 | __...... | 8 | 75 |
| MIMAT0032516 | ssa-miR-216a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0031549 | ppe-miR5225-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031543 | ppe-miR6267c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031239 | stu-miR1919-3p | 7 | __...... | 2 | 75 |
| MIMAT0030687 | prd-miR-7922-3p | 1 | __...... | 6 | 75 |
| MIMAT0030658 | prd-miR-7914-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029801 | mmu-miR-7649-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029695 | cbn-miR-58b | 6 | ......__ | 1 | 75 |
| MIMAT0029638 | crm-miR-58d | 6 | ......__ | 1 | 75 |
| MIMAT0029468 | ipu-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0029122 | hcmv-miR-UL59 | 3 | _......_ | 8 | 75 |
| MIMAT0029100 | gga-miR-7473-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029020 | oan-miR-216b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028118 | hsa-miR-7110-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028118 | hsa-miR-7110-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027853 | mmu-miR-6975-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027693 | mmu-miR-6896-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027691 | hsa-miR-6895-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027647 | hsa-miR-6873-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027567 | hsa-miR-6833-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027535 | hsa-miR-6817-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025728 | gga-miR-6632-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025722 | gga-miR-6626-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025716 | gga-miR-6620-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025650 | gga-miR-6571-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025267 | ptc-miR6457a | 3 | ......__ | 8 | 75 |
| MIMAT0024722 | nta-miR477b | 1 | _......_ | 6 | 75 |
| MIMAT0024281 | ggo-miR-3615 | 1 | _......_ | 6 | 75 |
| MIMAT0024086 | ggo-miR-185 | 8 | _......_ | 3 | 75 |
| MIMAT0023811 | cgr-miR-185-5p | 8 | _......_ | 3 | 75 |
| MIMAT0023713 | hsa-miR-6088 | 6 | ......__ | 1 | 75 |
| MIMAT0023544 | ame-miR-6002-3p | 6 | __...... | 1 | 75 |
| MIMAT0023141 | mtr-miR5757 | 7 | ......__ | 2 | 75 |
| MIMAT0023130 | mtr-miR5750 | 8 | _......_ | 3 | 75 |
| MIMAT0022776 | sha-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0022401 | ath-miR5640 | 7 | _......_ | 2 | 75 |
| MIMAT0021876 | aca-miR-216b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021178 | mtr-miR5221 | 8 | _......_ | 3 | 75 |
| MIMAT0021116 | hsa-miR-5186 | 6 | ......__ | 1 | 75 |
| MIMAT0020614 | mmu-miR-3473c | 1 | _......_ | 6 | 75 |
| MIMAT0021008 | gma-miR1513b | 7 | _......_ | 2 | 75 |
| MIMAT0019920 | hsa-miR-4768-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019809 | hsa-miR-4708-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019704 | hsa-miR-4644 | 8 | _......_ | 3 | 75 |
| MIMAT0019673 | osa-miR3979-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019673 | osa-miR3979-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019527 | pma-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0018898 | tca-miR-3897-5p | 3 | __...... | 8 | 75 |
| MIMAT0018610 | ame-miR-3741 | 7 | __...... | 2 | 75 |
| MIMAT0018512 | ame-miR-3717 | 7 | _......_ | 2 | 75 |
| MIMAT0018134 | pab-miR3702 | 2 | ......__ | 7 | 75 |
| MIMAT0018099 | hsa-miR-3675-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016858 | hsa-miR-4306 | 8 | _......_ | 3 | 75 |
| MIMAT0017846 | rno-miR-216b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015802 | ppy-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0015781 | ppy-miR-185 | 8 | _......_ | 3 | 75 |
| MIMAT0015645 | mmu-miR-3473a | 8 | _......_ | 3 | 75 |
| MIMAT0017647 | aly-miR859-5p | 1 | _......_ | 6 | 75 |
| MIMAT0015624 | bmo-miR-3417 | 7 | ......__ | 2 | 75 |
| MIMAT0014593 | tgu-miR-216b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013791 | bmo-miR-2833b | 6 | ......__ | 1 | 75 |
| MIMAT0013073 | eca-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0013071 | eca-miR-1461 | 1 | ......__ | 6 | 75 |
| MIMAT0013747 | bmo-miR-2833 | 6 | ......__ | 1 | 75 |
| MIMAT0012437 | dsi-miR-967-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012223 | dps-miR-980-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011970 | bta-miR-1584-3p | 2 | _......_ | 7 | 75 |
| MIMAT0011454 | cel-miR-2209b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0011432 | cel-miR-2209a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0010064 | osa-miR2100-5p | 2 | _......_ | 7 | 75 |
| MIMAT0010058 | osa-miR2097-5p | 6 | ......__ | 1 | 75 |
| MIMAT0009266 | bta-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0009247 | bta-miR-185 | 8 | _......_ | 3 | 75 |
| MIMAT0008072 | ptr-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0008053 | ptr-miR-185 | 8 | _......_ | 3 | 75 |
| MIMAT0007913 | sly-miR1919c-3p | 7 | __...... | 2 | 75 |
| MIMAT0007912 | sly-miR1919b | 7 | __...... | 2 | 75 |
| MIMAT0007911 | sly-miR1919a | 7 | __...... | 2 | 75 |
| MIMAT0007853 | ath-miR1886.1 | 7 | _......_ | 2 | 75 |
| MIMAT0007759 | ssc-miR-185 | 8 | _......_ | 3 | 75 |
| MIMAT0007748 | gga-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0006776 | cel-miR-58b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006660 | cfa-miR-185 | 8 | _......_ | 3 | 75 |
| MIMAT0006592 | cfa-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0006243 | mml-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0006219 | mml-miR-185-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007619 | gga-miR-1721 | 6 | ......__ | 1 | 75 |
| MIMAT0007418 | gga-miR-1560-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007371 | gma-miR1513a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0006135 | csa-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0006016 | hiv1-miR-TAR-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007339 | gga-miR-216c | 1 | ......__ | 6 | 75 |
| MIMAT0007215 | oan-miR-1406-3p | 3 | _......_ | 8 | 75 |
| MIMAT0006797 | oan-miR-1328 | 6 | _......_ | 1 | 75 |
| MIMAT0006797 | oan-miR-1328 | 8 | _......_ | 3 | 75 |
| MIMAT0005176 | ppt-miR1058 | 6 | ......__ | 1 | 75 |
| MIMAT0005165 | ppt-miR1049 | 1 | _......_ | 6 | 75 |
| MIMAT0005122 | ppt-miR1029 | 1 | _......_ | 6 | 75 |
| MIMAT0005122 | ppt-miR1029 | 3 | _......_ | 8 | 75 |
| MIMAT0005482 | dme-miR-967-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004959 | hsa-miR-216b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004847 | mmu-miR-882 | 8 | _......_ | 3 | 75 |
| MIMAT0004845 | mmu-miR-881-5p | 8 | _......_ | 3 | 75 |
| MIMAT0004303 | ath-miR859 | 1 | _......_ | 6 | 75 |
| MIMAT0004249 | ath-miR831-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003471 | mmu-miR-692 | 1 | ......__ | 6 | 75 |
| MIMAT0003729 | mmu-miR-216b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002976 | tni-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0002975 | fru-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0001867 | dre-miR-216b | 3 | ......__ | 8 | 75 |
| MIMAT0000862 | rno-miR-185-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000455 | hsa-miR-185-5p | 8 | _......_ | 3 | 75 |
| MIMAT0000214 | mmu-miR-185-5p | 8 | _......_ | 3 | 75 |
