| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atctttt | 7 | ||
| MIMAT0035470 | sly-miR9476-3p | 8 | ....... | 2 | 100 |
| MIMAT0028380 | mml-miR-7207-5p | 1 | ....... | 7 | 100 |
| MIMAT0027327 | ppe-miR6292 | 2 | ....... | 8 | 100 |
| MIMAT0020504 | dme-miR-4911-3p | 1 | ....... | 7 | 100 |
| MIMAT0014142 | ath-miR2938 | 2 | ....... | 8 | 100 |
| MIMAT0013737 | bmo-miR-2826 | 7 | ....... | 1 | 100 |
| MIMAT0012616 | bmo-miR-2738 | 1 | ....... | 7 | 100 |
| MIMAT0005546 | mcmv-miR-M44-1 | 2 | ....... | 8 | 100 |
| MIMAT0003428 | rlcv-miR-rL1-2-3p | 2 | ....... | 8 | 100 |
| MIMAT0000997 | ebv-miR-BHRF1-2-3p | 2 | ....... | 8 | 100 |
| MIMAT0036691 | oha-miR-130c-5p | 3 | _...... | 8 | 85 |
| MIMAT0036344 | gma-miR4348b | 1 | _...... | 6 | 85 |
| MIMAT0035943 | chi-miR-130a-5p | 3 | _...... | 8 | 85 |
| MIMAT0035629 | dvi-miR-9544a-3p | 7 | _...... | 2 | 85 |
| MIMAT0034454 | eca-miR-8926 | 8 | ......_ | 3 | 85 |
| MIMAT0034251 | gra-miR7492o | 8 | ......_ | 3 | 85 |
| MIMAT0033827 | atr-miR8556 | 7 | _...... | 2 | 85 |
| MIMAT0033052 | ppc-miR-8276-3p | 6 | _...... | 1 | 85 |
| MIMAT0032389 | ssa-miR-153a-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032327 | ssa-miR-130d-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0030916 | stu-miR8019-3p | 6 | _...... | 1 | 85 |
| MIMAT0030841 | prd-miR-7969-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030305 | bdi-miR7776-3p.1 | 6 | ......_ | 1 | 85 |
| MIMAT0030152 | bdi-miR7715-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030106 | bdi-miR5174d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028632 | mdo-miR-7316-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028624 | mdo-miR-7312-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028523 | mdo-miR-7274-3p | 3 | _...... | 8 | 85 |
| MIMAT0027923 | mmu-miR-7009-3p | 1 | _...... | 6 | 85 |
| MIMAT0027837 | mmu-miR-6967-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024978 | hme-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0024434 | mse-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0023754 | cgr-miR-130a-5p | 3 | _...... | 8 | 85 |
| MIMAT0023127 | mtr-miR5747 | 6 | _...... | 1 | 85 |
| MIMAT0022313 | cel-miR-5595-5p | 3 | _...... | 8 | 85 |
| MIMAT0022251 | sbi-miR5570 | 6 | _...... | 1 | 85 |
| MIMAT0022120 | osa-miR5487 | 6 | ......_ | 1 | 85 |
| MIMAT0021739 | aca-miR-130a-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0021686 | sbi-miR5388 | 1 | ......_ | 6 | 85 |
| MIMAT0021607 | gma-miR5370 | 8 | ......_ | 3 | 85 |
| MIMAT0020208 | dme-miR-4977-5p | 3 | _...... | 8 | 85 |
| MIMAT0020129 | cel-miR-4923a | 6 | _...... | 1 | 85 |
| MIMAT0019736 | hsa-miR-4662b | 6 | ......_ | 1 | 85 |
| MIMAT0019732 | hsa-miR-4662a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0018716 | tca-miR-316-5p | 3 | _...... | 8 | 85 |
| MIMAT0016839 | cin-miR-4217-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016752 | cin-miR-4149-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016965 | cin-miR-4000b-2-3p | 2 | _...... | 7 | 85 |
| MIMAT0017902 | rno-miR-741-3p | 6 | ......_ | 1 | 85 |
| MIMAT0017790 | esi-miR3468-3p | 2 | _...... | 7 | 85 |
| MIMAT0015464 | bmo-miR-3279 | 1 | _...... | 6 | 85 |
| MIMAT0015455 | bmo-miR-3270 | 3 | _...... | 8 | 85 |
| MIMAT0015030 | hsa-miR-3156-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014731 | api-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0014442 | cqu-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0014347 | ghr-miR2949c | 1 | _...... | 6 | 85 |
| MIMAT0014346 | ghr-miR2949b | 1 | _...... | 6 | 85 |
| MIMAT0014317 | aae-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0013849 | bta-miR-2891 | 1 | ......_ | 6 | 85 |
| MIMAT0013631 | bmo-miR-2759 | 8 | ......_ | 3 | 85 |
| MIMAT0013597 | bmo-miR-316-5p | 3 | _...... | 8 | 85 |
| MIMAT0011993 | bta-miR-2424 | 3 | ......_ | 8 | 85 |
| MIMAT0011434 | cel-miR-2209c-3p | 6 | _...... | 1 | 85 |
| MIMAT0012152 | sme-miR-2161-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011179 | osa-miR2120 | 6 | ......_ | 1 | 85 |
| MIMAT0010122 | ame-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0009080 | dya-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0009000 | dwi-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0008945 | dvi-miR-316-5p | 3 | _...... | 8 | 85 |
| MIMAT0008869 | dsi-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0008818 | dse-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0008764 | dpe-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0008627 | dmo-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0008591 | dgr-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0008496 | der-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0008449 | dan-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0006370 | mml-miR-511-5p | 3 | _...... | 8 | 85 |
| MIMAT0007698 | gga-miR-1786 | 3 | _...... | 8 | 85 |
| MIMAT0007616 | gga-miR-1719 | 6 | ......_ | 1 | 85 |
| MIMAT0007375 | gma-miR1516a-3p | 7 | _...... | 2 | 85 |
| MIMAT0026664 | mdo-miR-130a-5p | 3 | _...... | 8 | 85 |
| MIMAT0020348 | cel-miR-787-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026623 | hsa-miR-627-3p | 1 | _...... | 6 | 85 |
| MIMAT0026566 | mml-miR-130a-5p | 3 | _...... | 8 | 85 |
| MIMAT0001262 | dps-miR-316 | 3 | _...... | 8 | 85 |
| MIMAT0017121 | rno-miR-130a-5p | 3 | _...... | 8 | 85 |
| MIMAT0000408 | dme-miR-316-5p | 3 | _...... | 8 | 85 |
| MIMAT0016983 | mmu-miR-130a-5p | 3 | _...... | 8 | 85 |
