| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgactga | 8 | ||
| MIMAT0030703 | prd-miR-7927e-3p | 8 | ........ | 1 | 100 |
| MIMAT0030645 | prd-miR-7927b-3p | 8 | ........ | 1 | 100 |
| MIMAT0030613 | prd-miR-7927d-3p | 8 | ........ | 1 | 100 |
| MIMAT0030547 | prd-miR-7927a-3p | 8 | ........ | 1 | 100 |
| MIMAT0025860 | blv-miR-B2-5p | 1 | ........ | 8 | 100 |
| MIMAT0025833 | gga-miR-6562-3p | 8 | ........ | 1 | 100 |
| MIMAT0012885 | bta-miR-2917 | 1 | ........ | 8 | 100 |
| MIMAT0034887 | efu-miR-9189f | 2 | _....... | 8 | 87 |
| MIMAT0034465 | eca-miR-8936 | 2 | ......._ | 8 | 87 |
| MIMAT0034102 | gra-miR8713 | 1 | ......._ | 7 | 87 |
| MIMAT0033783 | pxy-miR-8535-5p | 1 | _....... | 7 | 87 |
| MIMAT0033507 | sma-miR-8403-3p | 1 | ......._ | 7 | 87 |
| MIMAT0033038 | ppc-miR-2238k-3p | 2 | ......._ | 8 | 87 |
| MIMAT0032674 | ssa-miR-725-3p | 8 | _....... | 2 | 87 |
| MIMAT0032587 | ssa-miR-29b-2-5p | 1 | _....... | 7 | 87 |
| MIMAT0029786 | tgu-miR-7643-5p | 2 | _....... | 8 | 87 |
| MIMAT0026312 | ccr-miR-725 | 8 | _....... | 2 | 87 |
| MIMAT0027615 | hsa-miR-6857-3p | 1 | _....... | 7 | 87 |
| MIMAT0024064 | ptr-miR-3136 | 2 | _....... | 8 | 87 |
| MIMAT0023256 | osa-miR5789 | 1 | _....... | 7 | 87 |
| MIMAT0022368 | mmu-miR-5620-3p | 8 | ......._ | 2 | 87 |
| MIMAT0022088 | aca-miR-5460 | 1 | _....... | 7 | 87 |
| MIMAT0021237 | mtr-miR5241c | 1 | _....... | 7 | 87 |
| MIMAT0021236 | mtr-miR5241b | 1 | _....... | 7 | 87 |
| MIMAT0021235 | mtr-miR5241a | 1 | _....... | 7 | 87 |
| MIMAT0019804 | hsa-miR-4704-3p | 7 | _....... | 1 | 87 |
| MIMAT0018957 | hsa-miR-4439 | 2 | _....... | 8 | 87 |
| MIMAT0015468 | bmo-miR-3282 | 7 | ......._ | 1 | 87 |
| MIMAT0015003 | hsa-miR-3136-5p | 2 | _....... | 8 | 87 |
| MIMAT0007314 | oan-miR-1422p-5p | 7 | _....... | 1 | 87 |
| MIMAT0003753 | dre-miR-725-3p | 8 | _....... | 2 | 87 |
| MIMAT0003497 | mmu-miR-707 | 7 | ......._ | 1 | 87 |
| MIMAT0002109 | mmu-miR-468-3p | 2 | ......._ | 8 | 87 |
| MIMAT0001737 | zma-miR171c-3p | 1 | _....... | 7 | 87 |
| MIMAT0035015 | efu-miR-1388 | 1 | .g...... | 8 | 87 |
| MIMAT0033739 | pxy-miR-8511 | 8 | .a...... | 1 | 87 |
| MIMAT0033538 | sma-miR-8417-5p | 8 | .a...... | 1 | 87 |
| MIMAT0032675 | ssa-miR-727-5p | 8 | .a...... | 1 | 87 |
| MIMAT0030611 | prd-miR-7927c-3p | 8 | .c...... | 1 | 87 |
| MIMAT0030543 | prd-miR-7886-3p | 8 | ......a. | 1 | 87 |
| MIMAT0026314 | ccr-miR-727-5p | 8 | .a...... | 1 | 87 |
| MIMAT0024942 | hme-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0024482 | mse-miR-2766 | 8 | .a...... | 1 | 87 |
| MIMAT0024463 | mse-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0021987 | aca-miR-727-5p | 8 | .a...... | 1 | 87 |
| MIMAT0019869 | hsa-miR-4740-5p | 1 | .g...... | 8 | 87 |
| MIMAT0019035 | hsa-miR-4499 | 1 | .a...... | 8 | 87 |
| MIMAT0018389 | ngi-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0015655 | nvi-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0015554 | bmo-miR-3368 | 8 | .a...... | 1 | 87 |
| MIMAT0014714 | api-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0014416 | cqu-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0014240 | aae-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0013642 | bmo-miR-2766-3p | 8 | .a...... | 1 | 87 |
| MIMAT0009076 | dya-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0009043 | dwi-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008971 | dvi-miR-14-3p | 8 | .a...... | 1 | 87 |
| MIMAT0008848 | dsi-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008813 | dse-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008703 | dpe-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008632 | dmo-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008602 | dgr-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008498 | der-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008460 | dan-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0008361 | tca-miR-14-3p | 8 | .a...... | 1 | 87 |
| MIMAT0006887 | oan-miR-1422f-5p | 8 | ......t. | 1 | 87 |
| MIMAT0006883 | oan-miR-1422h-5p | 8 | ......a. | 1 | 87 |
| MIMAT0006881 | oan-miR-1422e-5p | 8 | ......t. | 1 | 87 |
| MIMAT0004423 | ame-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0004196 | bmo-miR-14-3p | 8 | .a...... | 1 | 87 |
| MIMAT0003755 | dre-miR-727-5p | 8 | .a...... | 1 | 87 |
| MIMAT0001503 | aga-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0001219 | dps-miR-14 | 8 | .a...... | 1 | 87 |
| MIMAT0000120 | dme-miR-14-3p | 8 | .a...... | 1 | 87 |
| MIMAT0036869 | oha-miR-2970-5p | 8 | _......_ | 3 | 75 |
| MIMAT0036741 | oha-miR-15a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0036398 | gma-miR319q | 3 | __...... | 8 | 75 |
| MIMAT0036377 | gma-miR319o | 3 | __...... | 8 | 75 |
| MIMAT0036245 | chi-miR-485-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036159 | chi-miR-3431-5p | 8 | __...... | 3 | 75 |
| MIMAT0036127 | chi-miR-30d-3p | 8 | __...... | 3 | 75 |
| MIMAT0035951 | chi-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0035749 | rno-miR-452-3p | 6 | __...... | 1 | 75 |
| MIMAT0035499 | bdi-miR9481b | 6 | __...... | 1 | 75 |
| MIMAT0035487 | bdi-miR9481a | 6 | __...... | 1 | 75 |
| MIMAT0034893 | efu-miR-452 | 6 | __...... | 1 | 75 |
| MIMAT0034769 | efu-miR-9189e | 1 | _......_ | 6 | 75 |
| MIMAT0034669 | eca-miR-9120 | 6 | __...... | 1 | 75 |
| MIMAT0034425 | cfa-miR-508b | 1 | _......_ | 6 | 75 |
| MIMAT0034397 | cfa-miR-8890 | 1 | __...... | 6 | 75 |
| MIMAT0033771 | pxy-miR-8529 | 6 | __...... | 1 | 75 |
| MIMAT0033186 | ppc-miR-8245b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033087 | ppc-miR-76-5p | 1 | ......__ | 6 | 75 |
| MIMAT0033035 | ppc-miR-8271-5p | 8 | __...... | 3 | 75 |
| MIMAT0033021 | ppc-miR-8267-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032857 | ppc-miR-2238f-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032778 | ath-miR8179 | 1 | _......_ | 6 | 75 |
| MIMAT0031845 | cpa-miR8148 | 1 | _......_ | 6 | 75 |
| MIMAT0030908 | stu-miR8012 | 1 | ......__ | 6 | 75 |
| MIMAT0030778 | prd-miR-7952-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030643 | prd-miR-7939d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030566 | prd-miR-37-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030537 | prd-miR-7940c-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032185 | pmi-miR-2011-5p | 6 | _......_ | 1 | 75 |
| MIMAT0029855 | mmu-miR-3569-3p | 6 | __...... | 1 | 75 |
| MIMAT0029852 | mmu-miR-7673-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029075 | gga-miR-7460-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028869 | mdo-miR-7388a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028670 | mdo-miR-2970-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028623 | mdo-miR-30d-3p | 8 | __...... | 3 | 75 |
| MIMAT0028583 | mdo-miR-449b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028411 | mmu-miR-7221-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028397 | mmu-miR-7214-3p | 7 | __...... | 2 | 75 |
| MIMAT0027822 | mmu-miR-6961-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027611 | hsa-miR-6855-3p | 2 | __...... | 7 | 75 |
| MIMAT0025029 | sma-miR-2a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0025006 | hme-miR-6302-1-5p | 2 | __...... | 7 | 75 |
| MIMAT0024386 | ppy-miR-4667 | 1 | _......_ | 6 | 75 |
| MIMAT0027106 | mml-miR-873-3p | 2 | __...... | 7 | 75 |
| MIMAT0023760 | cgr-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0022166 | osa-miR5531 | 3 | _......_ | 8 | 75 |
| MIMAT0022050 | aca-miR-5429 | 8 | ......__ | 3 | 75 |
| MIMAT0022007 | aca-miR-5398-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021927 | aca-miR-30d-3p | 8 | __...... | 3 | 75 |
| MIMAT0021909 | aca-miR-2970-5p | 8 | _......_ | 3 | 75 |
| MIMAT0021793 | aca-miR-15a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0021183 | mtr-miR5225a | 6 | __...... | 1 | 75 |
| MIMAT0027071 | bdi-miR169h-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021024 | hsa-miR-5002-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020992 | gma-miR319d | 3 | __...... | 8 | 75 |
| MIMAT0019663 | pma-miR-4629 | 1 | _......_ | 6 | 75 |
| MIMAT0019426 | pma-miR-30c-3p | 8 | __...... | 3 | 75 |
| MIMAT0019308 | oar-miR-134-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019050 | hsa-miR-4513 | 2 | __...... | 7 | 75 |
| MIMAT0018575 | ame-miR-3792 | 1 | __...... | 6 | 75 |
| MIMAT0018530 | ame-miR-3758 | 6 | ......__ | 1 | 75 |
| MIMAT0016899 | hsa-miR-4264 | 8 | __...... | 3 | 75 |
| MIMAT0016314 | sja-miR-3505 | 1 | _......_ | 6 | 75 |
| MIMAT0016245 | sja-miR-2a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0016141 | ppy-miR-943 | 2 | _......_ | 7 | 75 |
| MIMAT0016058 | ppy-miR-616 | 6 | ......__ | 1 | 75 |
| MIMAT0017394 | bta-miR-3431 | 8 | __...... | 3 | 75 |
| MIMAT0015593 | bmo-miR-2733a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0015582 | bmo-miR-3385-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015556 | bmo-miR-3267c | 1 | __...... | 6 | 75 |
| MIMAT0015539 | bmo-miR-2733j | 6 | ......__ | 1 | 75 |
| MIMAT0015398 | bmo-miR-3218 | 6 | ......__ | 1 | 75 |
| MIMAT0014980 | hsa-miR-3118 | 3 | _......_ | 8 | 75 |
| MIMAT0014931 | mmu-miR-344f-5p | 8 | __...... | 3 | 75 |
| MIMAT0014613 | tgu-miR-30d-3p | 8 | __...... | 3 | 75 |
| MIMAT0014479 | tgu-miR-2970-5p | 8 | _......_ | 3 | 75 |
| MIMAT0013127 | eca-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0012723 | iltv-miR-I1-5p | 2 | __...... | 7 | 75 |
| MIMAT0013549 | cte-miR-2692 | 7 | _......_ | 2 | 75 |
| MIMAT0011928 | bta-miR-2380 | 2 | _......_ | 7 | 75 |
| MIMAT0011806 | bta-miR-2298 | 1 | __...... | 6 | 75 |
| MIMAT0011642 | ppc-miR-63g | 2 | ......__ | 7 | 75 |
| MIMAT0011389 | sbi-miR821e | 7 | ......__ | 2 | 75 |
| MIMAT0011388 | sbi-miR821d | 7 | ......__ | 2 | 75 |
| MIMAT0011387 | sbi-miR821c | 7 | ......__ | 2 | 75 |
| MIMAT0011385 | sbi-miR821a | 7 | ......__ | 2 | 75 |
| MIMAT0009883 | cfa-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0009396 | mmu-miR-1933-5p | 6 | ......__ | 1 | 75 |
| MIMAT0009227 | bta-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0019104 | tca-miR-13b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0008349 | ptr-miR-943 | 2 | _......_ | 7 | 75 |
| MIMAT0008278 | ptr-miR-616 | 6 | ......__ | 1 | 75 |
| MIMAT0008031 | ptr-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0006190 | mml-miR-134-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026807 | mml-miR-30e-3p | 8 | __...... | 3 | 75 |
| MIMAT0026806 | mml-miR-30d-3p | 8 | __...... | 3 | 75 |
| MIMAT0007744 | gga-miR-449b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007641 | gga-miR-1738 | 3 | _......_ | 8 | 75 |
| MIMAT0007448 | gga-miR-1586 | 6 | _......_ | 1 | 75 |
| MIMAT0017318 | rno-miR-873-3p | 3 | __...... | 8 | 75 |
| MIMAT0017289 | rno-miR-871-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004986 | hsa-miR-943 | 2 | _......_ | 7 | 75 |
| MIMAT0017279 | mmu-miR-873a-3p | 3 | __...... | 8 | 75 |
| MIMAT0004917 | hsa-miR-888-3p | 1 | __...... | 6 | 75 |
| MIMAT0017265 | mmu-miR-871-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026652 | mdo-miR-30a-3p | 8 | __...... | 3 | 75 |
| MIMAT0004084 | osa-miR821c | 7 | ......__ | 2 | 75 |
| MIMAT0004083 | osa-miR821b | 7 | ......__ | 2 | 75 |
| MIMAT0004082 | osa-miR821a | 7 | ......__ | 2 | 75 |
| MIMAT0004805 | hsa-miR-616-3p | 6 | ......__ | 1 | 75 |
| MIMAT0003129 | mmu-miR-485-3p | 6 | ......__ | 1 | 75 |
| MIMAT0002291 | ppa-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0002290 | mne-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0002289 | ppy-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0002288 | ggo-miR-134 | 3 | _......_ | 8 | 75 |
| MIMAT0022699 | mmu-miR-468-5p | 1 | __...... | 6 | 75 |
| MIMAT0017194 | mmu-miR-452-3p | 6 | __...... | 1 | 75 |
| MIMAT0026538 | gga-miR-30e-3p | 8 | __...... | 3 | 75 |
| MIMAT0000840 | rno-miR-134-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000447 | hsa-miR-134-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020328 | cel-miR-231-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000146 | mmu-miR-134-5p | 3 | _......_ | 8 | 75 |
