| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgagtgg | 8 | ||
| MIMAT0034576 | eca-miR-9034 | 8 | ........ | 1 | 100 |
| MIMAT0035143 | efu-miR-9186j | 1 | _....... | 7 | 87 |
| MIMAT0033862 | atr-miR8578.2 | 2 | ......._ | 8 | 87 |
| MIMAT0033819 | pxy-miR-279b-5p | 2 | ......._ | 8 | 87 |
| MIMAT0029903 | mmu-miR-7687-3p | 7 | _....... | 1 | 87 |
| MIMAT0027812 | mmu-miR-6956-5p | 1 | _....... | 7 | 87 |
| MIMAT0025308 | prv-miR-LLT5 | 1 | _....... | 7 | 87 |
| MIMAT0024000 | cgr-miR-702 | 2 | _....... | 8 | 87 |
| MIMAT0023408 | hco-miR-5927 | 8 | _....... | 2 | 87 |
| MIMAT0019903 | hsa-miR-4758-5p | 2 | _....... | 8 | 87 |
| MIMAT0019878 | hsa-miR-4745-5p | 1 | _....... | 7 | 87 |
| MIMAT0018057 | dme-miR-3642-5p | 2 | _....... | 8 | 87 |
| MIMAT0016773 | cin-miR-4165-3p | 1 | _....... | 7 | 87 |
| MIMAT0017884 | rno-miR-702-5p | 2 | _....... | 8 | 87 |
| MIMAT0014933 | mmu-miR-3102-5p | 2 | _....... | 8 | 87 |
| MIMAT0013606 | bmo-miR-279d-5p | 2 | ......._ | 8 | 87 |
| MIMAT0012412 | dps-miR-2571-5p | 2 | _....... | 8 | 87 |
| MIMAT0012352 | dps-miR-2546-5p | 2 | _....... | 8 | 87 |
| MIMAT0022947 | hsa-miR-1238-5p | 2 | _....... | 8 | 87 |
| MIMAT0022931 | mmu-miR-702-5p | 2 | _....... | 8 | 87 |
| MIMAT0001008 | ath-miR405d | 1 | ......t. | 8 | 87 |
| MIMAT0001007 | ath-miR405b | 1 | ......t. | 8 | 87 |
| MIMAT0001006 | ath-miR405a | 1 | ......t. | 8 | 87 |
| MIMAT0037224 | ata-miR9677-5p | 8 | __...... | 3 | 75 |
| MIMAT0037110 | ata-miR2275a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035459 | sly-miR482d-5p | 2 | __...... | 7 | 75 |
| MIMAT0035321 | gsa-miR-71c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035244 | gsa-miR-279-5p | 3 | _......_ | 8 | 75 |
| MIMAT0034820 | efu-miR-9223b | 1 | _......_ | 6 | 75 |
| MIMAT0034693 | eca-miR-9141 | 3 | _......_ | 8 | 75 |
| MIMAT0034618 | eca-miR-9073 | 1 | _......_ | 6 | 75 |
| MIMAT0034543 | eca-miR-9003 | 8 | __...... | 3 | 75 |
| MIMAT0034379 | cfa-miR-8879 | 7 | ......__ | 2 | 75 |
| MIMAT0033712 | pxy-miR-8501 | 2 | _......_ | 7 | 75 |
| MIMAT0032958 | ppc-miR-8247-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032841 | cel-miR-2217b-5p | 3 | __...... | 8 | 75 |
| MIMAT0031341 | stu-miR397-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031236 | stu-miR5304-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031218 | stu-miR8011b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030144 | bdi-miR7711-3p.3 | 2 | ......__ | 7 | 75 |
| MIMAT0030065 | bdi-miR397b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029279 | mes-miR397 | 3 | _......_ | 8 | 75 |
| MIMAT0029045 | gga-miR-7445-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028645 | mdo-miR-7322-3p | 1 | __...... | 6 | 75 |
| MIMAT0028342 | mml-miR-7192-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028288 | mml-miR-6790-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028273 | mml-miR-7169-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026065 | mdm-miR7127b | 8 | ......__ | 3 | 75 |
| MIMAT0026064 | mdm-miR7127a | 8 | ......__ | 3 | 75 |
| MIMAT0025997 | mdm-miR397b | 2 | _......_ | 7 | 75 |
| MIMAT0025996 | mdm-miR397a | 2 | _......_ | 7 | 75 |
| MIMAT0028024 | mmu-miR-7060-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027913 | mmu-miR-7004-3p | 7 | __...... | 2 | 75 |
| MIMAT0027598 | hsa-miR-6849-5p | 1 | __...... | 6 | 75 |
| MIMAT0027480 | hsa-miR-6790-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027455 | hsa-miR-6777-3p | 7 | __...... | 2 | 75 |
| MIMAT0027417 | hsa-miR-6758-3p | 6 | ......__ | 1 | 75 |
| MIMAT0024806 | hvu-miR6182 | 1 | _......_ | 6 | 75 |
| MIMAT0024750 | nta-miR6151i | 1 | _......_ | 6 | 75 |
| MIMAT0024749 | nta-miR6151h | 1 | _......_ | 6 | 75 |
| MIMAT0024748 | nta-miR6151g | 1 | _......_ | 6 | 75 |
| MIMAT0024747 | nta-miR6151f | 1 | _......_ | 6 | 75 |
| MIMAT0024711 | nta-miR397 | 3 | _......_ | 8 | 75 |
| MIMAT0027170 | lus-miR397a | 3 | _......_ | 8 | 75 |
| MIMAT0024577 | bta-miR-574 | 1 | _......_ | 6 | 75 |
| MIMAT0027114 | mml-miR-1296-3p | 1 | __...... | 6 | 75 |
| MIMAT0031162 | stu-miR482d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031160 | stu-miR482b-5p | 2 | __...... | 7 | 75 |
| MIMAT0021441 | asu-miR-36b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020532 | ath-miR5026 | 6 | ......__ | 1 | 75 |
| MIMAT0020507 | dme-miR-4914-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019916 | hsa-miR-4765 | 1 | _......_ | 6 | 75 |
| MIMAT0019725 | hsa-miR-4658 | 2 | _......_ | 7 | 75 |
| MIMAT0019015 | hsa-miR-4481 | 2 | __...... | 7 | 75 |
| MIMAT0018488 | csi-miR3948 | 3 | __...... | 8 | 75 |
| MIMAT0018655 | tca-miR-3815-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018080 | hsa-miR-3659 | 1 | _......_ | 6 | 75 |
| MIMAT0018063 | dme-miR-3645-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018061 | dme-miR-3644-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018055 | dme-miR-3641-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017976 | ssc-miR-1296-3p | 1 | __...... | 6 | 75 |
| MIMAT0016808 | cin-miR-4190-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016388 | gga-miR-3537 | 2 | _......_ | 7 | 75 |
| MIMAT0017730 | aly-miR3447-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017728 | aly-miR3446-3p | 8 | __...... | 3 | 75 |
| MIMAT0014850 | mmu-miR-3071-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012888 | eca-miR-1244 | 1 | __...... | 6 | 75 |
| MIMAT0012846 | rno-miR-201-5p | 6 | _......_ | 1 | 75 |
| MIMAT0013410 | mtr-miR2642 | 1 | ......__ | 6 | 75 |
| MIMAT0012526 | dsi-miR-983a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012372 | dps-miR-2555-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012300 | dps-miR-2515 | 3 | ......__ | 8 | 75 |
| MIMAT0012194 | dme-miR-307b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0012047 | bta-miR-2461-5p | 6 | __...... | 1 | 75 |
| MIMAT0011932 | bta-miR-2383 | 2 | _......_ | 7 | 75 |
| MIMAT0011451 | cel-miR-2217a-5p | 3 | __...... | 8 | 75 |
| MIMAT0012147 | sme-miR-1175-5p | 1 | __...... | 6 | 75 |
| MIMAT0017344 | mmu-miR-1948-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032047 | dvi-miR-279-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007928 | sly-miR397 | 3 | _......_ | 8 | 75 |
| MIMAT0007882 | hsa-miR-1909-5p | 1 | _......_ | 6 | 75 |
| MIMAT0006371 | mml-miR-512-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007505 | gga-miR-1632-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007428 | gga-miR-1568 | 7 | ......__ | 2 | 75 |
| MIMAT0022945 | hsa-miR-1236-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005852 | mmu-miR-1194 | 3 | ......__ | 8 | 75 |
| MIMAT0005430 | cre-miR1171 | 3 | __...... | 8 | 75 |
| MIMAT0005108 | ppt-miR1023d-5p | 6 | __...... | 1 | 75 |
| MIMAT0005106 | ppt-miR1023c-5p | 6 | __...... | 1 | 75 |
| MIMAT0020897 | dme-miR-997-3p | 8 | ......__ | 3 | 75 |
| MIMAT0004893 | mmu-miR-574-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026637 | hsa-miR-1296-3p | 1 | __...... | 6 | 75 |
| MIMAT0004795 | hsa-miR-574-5p | 1 | _......_ | 6 | 75 |
| MIMAT0002822 | hsa-miR-512-5p | 6 | _......_ | 1 | 75 |
| MIMAT0001572 | mghv-miR-M1-8-5p | 8 | _......_ | 3 | 75 |
