| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgcttgt | 8 | ||
| MIMAT0035684 | bra-miR408-3p | 1 | _....... | 7 | 87 |
| MIMAT0031370 | stu-miR169f-3p | 8 | ......._ | 2 | 87 |
| MIMAT0024562 | cca-miR6116-5p | 2 | ......._ | 8 | 87 |
| MIMAT0020551 | osa-miR5071 | 8 | ......._ | 2 | 87 |
| MIMAT0017868 | rno-miR-3580-5p | 1 | _....... | 7 | 87 |
| MIMAT0007504 | gga-miR-1632-5p | 1 | _....... | 7 | 87 |
| MIMAT0003920 | mdv1-miR-M1-5p | 1 | _....... | 7 | 87 |
| MIMAT0022899 | ptc-miR169n-3p | 8 | ......._ | 2 | 87 |
| MIMAT0032279 | ssa-miR-100a-2-3p | 8 | .a...... | 1 | 87 |
| MIMAT0032278 | ssa-miR-100a-3p | 8 | .a...... | 1 | 87 |
| MIMAT0027949 | mmu-miR-7022-3p | 8 | .g...... | 1 | 87 |
| MIMAT0018935 | hsa-miR-4422 | 8 | ......t. | 1 | 87 |
| MIMAT0018177 | dre-miR-3906 | 8 | ......t. | 1 | 87 |
| MIMAT0014633 | tgu-miR-100-3p | 8 | .a...... | 1 | 87 |
| MIMAT0007625 | gga-miR-1726 | 1 | .a...... | 8 | 87 |
| MIMAT0026656 | mdo-miR-100-3p | 1 | .a...... | 8 | 87 |
| MIMAT0026580 | mml-miR-100-3p | 1 | .a...... | 8 | 87 |
| MIMAT0026539 | gga-miR-100-3p | 1 | .a...... | 8 | 87 |
| MIMAT0017051 | mmu-miR-100-3p | 8 | .a...... | 1 | 87 |
| MIMAT0036753 | oha-miR-1788-5p | 2 | __...... | 7 | 75 |
| MIMAT0036649 | oha-miR-100-3p | 8 | __...... | 3 | 75 |
| MIMAT0035493 | bdi-miR9486a | 1 | ......__ | 6 | 75 |
| MIMAT0035316 | gsa-miR-153-5p | 3 | _......_ | 8 | 75 |
| MIMAT0034783 | efu-miR-9198e | 1 | _......_ | 6 | 75 |
| MIMAT0034775 | efu-miR-9195 | 8 | _......_ | 3 | 75 |
| MIMAT0034050 | gra-miR8679 | 6 | __...... | 1 | 75 |
| MIMAT0033296 | str-miR-1-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033162 | ppc-miR-8364w-3p | 7 | ......__ | 2 | 75 |
| MIMAT0033108 | ppc-miR-8364v-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032500 | ssa-miR-206-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032412 | ssa-miR-1788-5p | 2 | __...... | 7 | 75 |
| MIMAT0031687 | bbe-miR-4865-5p | 1 | __...... | 6 | 75 |
| MIMAT0030352 | hhi-miR-1788 | 2 | __...... | 7 | 75 |
| MIMAT0030213 | bdi-miR7738-3p | 2 | _......_ | 7 | 75 |
| MIMAT0030014 | mtr-miR2592br-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030012 | mtr-miR2592bq-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030009 | mtr-miR2592bp-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030008 | mtr-miR2592bo-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029875 | mmu-miR-7680-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029832 | mmu-miR-7663-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029553 | ipu-miR-7557 | 1 | _......_ | 6 | 75 |
| MIMAT0029433 | ipu-miR-1788 | 2 | __...... | 7 | 75 |
| MIMAT0029369 | lja-miR7542 | 1 | _......_ | 6 | 75 |
| MIMAT0029139 | ghr-miR7494 | 2 | __...... | 7 | 75 |
| MIMAT0027839 | mmu-miR-6968-3p | 6 | __...... | 1 | 75 |
| MIMAT0025444 | pol-miR-206-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025407 | tgu-miR-1788 | 2 | __...... | 7 | 75 |
| MIMAT0024329 | mml-miR-1179 | 6 | ......__ | 1 | 75 |
| MIMAT0024218 | ggo-miR-1179 | 6 | ......__ | 1 | 75 |
| MIMAT0022577 | ola-miR-137 | 2 | _......_ | 7 | 75 |
| MIMAT0021805 | aca-miR-1788-5p | 2 | __...... | 7 | 75 |
| MIMAT0021331 | mtr-miR2600e | 6 | ......__ | 1 | 75 |
| MIMAT0021330 | mtr-miR2600d | 6 | ......__ | 1 | 75 |
| MIMAT0021329 | mtr-miR2600c | 6 | ......__ | 1 | 75 |
| MIMAT0021328 | mtr-miR2600b | 6 | ......__ | 1 | 75 |
| MIMAT0021171 | mtr-miR2592ao | 3 | ......__ | 8 | 75 |
| MIMAT0021170 | mtr-miR2592an | 3 | ......__ | 8 | 75 |
| MIMAT0020629 | mmu-miR-5121 | 2 | __...... | 7 | 75 |
| MIMAT0020099 | bfl-miR-4865-5p | 1 | __...... | 6 | 75 |
| MIMAT0020052 | sko-miR-4835-3p | 7 | _......_ | 2 | 75 |
| MIMAT0019589 | pma-miR-4557 | 3 | ......__ | 8 | 75 |
| MIMAT0019561 | pma-miR-1788a-5p | 2 | __...... | 7 | 75 |
| MIMAT0019438 | pma-miR-100a-3p | 6 | __...... | 1 | 75 |
| MIMAT0019351 | mmu-miR-3967 | 2 | __...... | 7 | 75 |
| MIMAT0018620 | tca-miR-3802-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018079 | hsa-miR-1273e | 2 | _......_ | 7 | 75 |
| MIMAT0018075 | hsa-miR-3655 | 1 | __...... | 6 | 75 |
| MIMAT0016144 | ppy-miR-1179 | 6 | ......__ | 1 | 75 |
| MIMAT0016074 | ppy-miR-636 | 3 | _......_ | 8 | 75 |
| MIMAT0017772 | esi-miR3457-3p | 3 | __...... | 8 | 75 |
| MIMAT0017605 | aly-miR825-5p | 7 | _......_ | 2 | 75 |
| MIMAT0015507 | bmo-miR-3319 | 6 | __...... | 1 | 75 |
| MIMAT0014415 | cqu-miR-932-3p | 8 | _......_ | 3 | 75 |
| MIMAT0014270 | aae-miR-932-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012887 | eca-miR-1179 | 6 | ......__ | 1 | 75 |
| MIMAT0013355 | mtr-miR2592n | 3 | ......__ | 8 | 75 |
| MIMAT0013354 | mtr-miR2592m | 3 | ......__ | 8 | 75 |
| MIMAT0013353 | mtr-miR2592l | 3 | ......__ | 8 | 75 |
| MIMAT0013352 | mtr-miR2592k | 3 | ......__ | 8 | 75 |
| MIMAT0013351 | mtr-miR2592h | 3 | ......__ | 8 | 75 |
| MIMAT0013350 | mtr-miR2592g | 3 | ......__ | 8 | 75 |
| MIMAT0013349 | mtr-miR2592a.2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013279 | mtr-miR2592s-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013278 | mtr-miR2592r | 3 | ......__ | 8 | 75 |
| MIMAT0013277 | mtr-miR2592q-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013276 | mtr-miR2592p | 3 | ......__ | 8 | 75 |
| MIMAT0013275 | mtr-miR2592o-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013274 | mtr-miR2592j | 3 | ......__ | 8 | 75 |
| MIMAT0013273 | mtr-miR2592i | 3 | ......__ | 8 | 75 |
| MIMAT0013272 | mtr-miR2592f | 3 | ......__ | 8 | 75 |
| MIMAT0013271 | mtr-miR2592e-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013270 | mtr-miR2592d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013269 | mtr-miR2592c | 3 | ......__ | 8 | 75 |
| MIMAT0013268 | mtr-miR2592b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012208 | dme-miR-2497-5p | 8 | ......__ | 3 | 75 |
| MIMAT0011294 | dre-miR-1788-5p | 2 | __...... | 7 | 75 |
| MIMAT0011268 | sme-miR-754d | 3 | _......_ | 8 | 75 |
| MIMAT0011237 | sme-miR-754c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0011236 | sme-miR-754b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009957 | bta-miR-1179 | 6 | ......__ | 1 | 75 |
| MIMAT0009772 | nve-miR-2027-5p | 1 | __...... | 6 | 75 |
| MIMAT0009150 | bkv-miR-B1-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009148 | jcv-miR-J1-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032082 | dvi-miR-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019132 | tca-miR-932-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019115 | tca-miR-125-3p | 6 | __...... | 1 | 75 |
| MIMAT0007948 | ptr-miR-1179 | 6 | ......__ | 1 | 75 |
| MIMAT0006479 | mml-miR-636 | 3 | _......_ | 8 | 75 |
| MIMAT0007700 | gga-miR-1788-5p | 2 | __...... | 7 | 75 |
| MIMAT0007476 | gga-miR-1610 | 3 | __...... | 8 | 75 |
| MIMAT0006994 | oan-miR-206-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005824 | hsa-miR-1179 | 6 | ......__ | 1 | 75 |
| MIMAT0005207 | ppt-miR1076-3p | 7 | _......_ | 2 | 75 |
| MIMAT0011089 | mtr-miR168a | 2 | _......_ | 7 | 75 |
| MIMAT0004021 | sme-miR-754a | 3 | _......_ | 8 | 75 |
| MIMAT0003306 | hsa-miR-636 | 3 | _......_ | 8 | 75 |
| MIMAT0031988 | dre-miR-206-5p | 3 | ......__ | 8 | 75 |
| MIMAT0001579 | hcmv-miR-US5-1 | 8 | __...... | 3 | 75 |
| MIMAT0017154 | rno-miR-206-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017004 | mmu-miR-206-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020779 | dme-miR-1-5p | 3 | ......__ | 8 | 75 |
