| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgggggc | 8 | ||
| MIMAT0028606 | mdo-miR-7306-5p | 1 | ........ | 8 | 100 |
| MIMAT0005545 | mcmv-miR-M23-2-3p | 1 | ........ | 8 | 100 |
| MIMAT0034985 | efu-miR-4667 | 1 | _....... | 7 | 87 |
| MIMAT0034481 | eca-miR-8952 | 8 | _....... | 2 | 87 |
| MIMAT0034035 | gra-miR7486d | 1 | _....... | 7 | 87 |
| MIMAT0028044 | mmu-miR-7069-5p | 2 | _....... | 8 | 87 |
| MIMAT0027950 | mmu-miR-7023-5p | 1 | ......._ | 7 | 87 |
| MIMAT0027694 | mmu-miR-6897-5p | 1 | _....... | 7 | 87 |
| MIMAT0027596 | hsa-miR-6848-5p | 1 | _....... | 7 | 87 |
| MIMAT0027592 | hsa-miR-6846-5p | 1 | _....... | 7 | 87 |
| MIMAT0025311 | prv-miR-LLT8 | 2 | _....... | 8 | 87 |
| MIMAT0023227 | gma-miR482e | 2 | ......._ | 8 | 87 |
| MIMAT0021671 | gma-miR482d-5p | 2 | ......._ | 8 | 87 |
| MIMAT0018286 | gma-miR482b-5p | 2 | ......._ | 8 | 87 |
| MIMAT0012035 | bta-miR-2454-5p | 2 | _....... | 8 | 87 |
| MIMAT0012032 | bta-miR-1777a | 1 | _....... | 7 | 87 |
| MIMAT0012005 | bta-miR-2433 | 1 | _....... | 7 | 87 |
| MIMAT0028071 | mmu-miR-7082-3p | 8 | .g...... | 1 | 87 |
| MIMAT0027670 | hsa-miR-6885-5p | 1 | .g...... | 8 | 87 |
| MIMAT0027520 | hsa-miR-6810-5p | 1 | ......a. | 8 | 87 |
| MIMAT0037155 | ata-miR9772b-3p | 2 | __...... | 7 | 75 |
| MIMAT0037107 | ata-miR9772a-3p | 2 | __...... | 7 | 75 |
| MIMAT0037011 | ssc-miR-9793-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036891 | oha-miR-30b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036172 | chi-miR-361-3p | 7 | _......_ | 2 | 75 |
| MIMAT0034988 | efu-miR-9313 | 3 | _......_ | 8 | 75 |
| MIMAT0034774 | efu-miR-9194 | 2 | _......_ | 7 | 75 |
| MIMAT0034525 | eca-miR-8988 | 8 | __...... | 3 | 75 |
| MIMAT0034284 | cfa-miR-8794 | 8 | ......__ | 3 | 75 |
| MIMAT0032805 | cel-miR-8196a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032780 | ath-miR8181 | 1 | _......_ | 6 | 75 |
| MIMAT0032317 | ssa-miR-128-4-5p | 1 | __...... | 6 | 75 |
| MIMAT0031374 | stu-miR384-3p | 2 | __...... | 7 | 75 |
| MIMAT0030917 | stu-miR8001b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030710 | prd-miR-7931-5p | 1 | __...... | 6 | 75 |
| MIMAT0030648 | prd-miR-7911b-5p | 6 | __...... | 1 | 75 |
| MIMAT0030646 | prd-miR-7911a-5p | 6 | __...... | 1 | 75 |
| MIMAT0028740 | mdo-miR-7364-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028603 | mdo-miR-7304-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028392 | mmu-miR-7212-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028364 | mml-miR-7200-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028135 | mmu-miR-7119-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028131 | mmu-miR-7117-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028119 | hsa-miR-7111-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028117 | hsa-miR-7110-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028115 | hsa-miR-7109-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028052 | mmu-miR-7073-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027952 | mmu-miR-7024-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027916 | mmu-miR-7006-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027862 | mmu-miR-6980-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027844 | mmu-miR-6971-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027838 | mmu-miR-6968-5p | 2 | __...... | 7 | 75 |
| MIMAT0027782 | mmu-miR-6941-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027720 | mmu-miR-6910-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027680 | hsa-miR-6890-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027674 | hsa-miR-6887-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027640 | hsa-miR-6870-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027586 | hsa-miR-6842-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027524 | hsa-miR-6812-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027510 | hsa-miR-6805-5p | 3 | __...... | 8 | 75 |
| MIMAT0027506 | hsa-miR-6803-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027490 | hsa-miR-6795-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027402 | hsa-miR-6751-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025721 | gga-miR-6625-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025702 | gga-miR-6608-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025688 | gga-miR-6594-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025071 | rno-miR-3072 | 7 | __...... | 2 | 75 |
| MIMAT0027288 | ppe-miR477b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027287 | ppe-miR477a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0024864 | mmu-miR-6244 | 1 | __...... | 6 | 75 |
| MIMAT0024820 | hvu-miR6194 | 2 | ......__ | 7 | 75 |
| MIMAT0024363 | ppy-miR-3943 | 8 | __...... | 3 | 75 |
| MIMAT0024210 | ggo-miR-3943 | 8 | __...... | 3 | 75 |
| MIMAT0024152 | ggo-miR-4488 | 3 | __...... | 8 | 75 |
| MIMAT0024046 | ptr-miR-3943 | 8 | __...... | 3 | 75 |
| MIMAT0023893 | cgr-miR-3072-3p | 7 | __...... | 2 | 75 |
| MIMAT0023552 | ame-miR-2765-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022491 | hsa-miR-5698 | 1 | _......_ | 6 | 75 |
| MIMAT0022381 | mmu-miR-5626-5p | 7 | ......__ | 2 | 75 |
| MIMAT0021732 | aca-miR-128-5p | 1 | __...... | 6 | 75 |
| MIMAT0021275 | mtr-miR5266 | 2 | _......_ | 7 | 75 |
| MIMAT0019838 | hsa-miR-4723-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019791 | hsa-miR-4697-5p | 2 | __...... | 7 | 75 |
| MIMAT0019739 | hsa-miR-4665-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019022 | hsa-miR-4488 | 2 | __...... | 7 | 75 |
| MIMAT0018999 | hsa-miR-4472 | 3 | _......_ | 8 | 75 |
| MIMAT0018966 | hsa-miR-4447 | 3 | _......_ | 8 | 75 |
| MIMAT0018359 | hsa-miR-3943 | 8 | __...... | 3 | 75 |
| MIMAT0018904 | tca-miR-3900-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018654 | tca-miR-3815-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018098 | hsa-miR-3675-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016865 | hsa-miR-4313 | 7 | __...... | 2 | 75 |
| MIMAT0016238 | ppy-miR-1909 | 3 | _......_ | 8 | 75 |
| MIMAT0016199 | ppy-miR-1275 | 2 | _......_ | 7 | 75 |
| MIMAT0016075 | ppy-miR-637 | 3 | _......_ | 8 | 75 |
| MIMAT0015849 | ppy-miR-361-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015650 | hsv2-miR-H5 | 3 | __...... | 8 | 75 |
| MIMAT0019217 | hsa-miR-3189-5p | 8 | ......__ | 3 | 75 |
| MIMAT0014939 | mmu-miR-3104-5p | 3 | __...... | 8 | 75 |
| MIMAT0014906 | mmu-miR-3092-3p | 3 | ......__ | 8 | 75 |
| MIMAT0014853 | mmu-miR-3072-3p | 7 | __...... | 2 | 75 |
| MIMAT0026977 | tgu-miR-128-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0019189 | rlcv-miR-rL1-22-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013934 | ssc-miR-361-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013209 | eca-miR-361-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012598 | hsv1-miR-H8-3p | 6 | __...... | 1 | 75 |
| MIMAT0012046 | bta-miR-1777b | 1 | __...... | 6 | 75 |
| MIMAT0012002 | bta-miR-2431-3p | 8 | _......_ | 3 | 75 |
| MIMAT0011857 | bta-miR-2328-5p | 6 | __...... | 1 | 75 |
| MIMAT0011856 | bta-miR-2327 | 2 | __...... | 7 | 75 |
| MIMAT0008293 | ptr-miR-637 | 3 | _......_ | 8 | 75 |
| MIMAT0008115 | ptr-miR-361 | 7 | _......_ | 2 | 75 |
| MIMAT0007996 | ptr-miR-1275 | 2 | _......_ | 7 | 75 |
| MIMAT0006287 | mml-miR-361-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026814 | mml-miR-128b-5p | 1 | __...... | 6 | 75 |
| MIMAT0007683 | gga-miR-1773-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007472 | gga-miR-1606 | 2 | __...... | 7 | 75 |
| MIMAT0007403 | gga-miR-1550-5p | 3 | ......__ | 8 | 75 |
| MIMAT0007078 | oan-miR-1421p-5p | 2 | __...... | 7 | 75 |
| MIMAT0005929 | hsa-miR-1275 | 2 | _......_ | 7 | 75 |
| MIMAT0005594 | mml-miR-1239 | 8 | ......__ | 3 | 75 |
| MIMAT0022946 | hsa-miR-1237-5p | 2 | __...... | 7 | 75 |
| MIMAT0032027 | dme-miR-1004-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026662 | mdo-miR-128a-5p | 1 | __...... | 6 | 75 |
| MIMAT0009207 | mdv1-miR-M3-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015238 | kshv-miR-K12-12-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003307 | hsa-miR-637 | 3 | _......_ | 8 | 75 |
| MIMAT0017199 | rno-miR-361-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026512 | gga-miR-30b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026506 | gga-miR-128-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0017119 | rno-miR-128-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0026486 | hsa-miR-328-5p | 3 | __...... | 8 | 75 |
| MIMAT0017075 | mmu-miR-361-3p | 7 | _......_ | 2 | 75 |
| MIMAT0004682 | hsa-miR-361-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031095 | hsa-miR-128-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0017069 | mmu-miR-128-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0017030 | mmu-miR-328-5p | 2 | __...... | 7 | 75 |
| MIMAT0017029 | rno-miR-328a-5p | 2 | __...... | 7 | 75 |
| MIMAT0017028 | rno-miR-326-5p | 1 | __...... | 6 | 75 |
| MIMAT0017027 | mmu-miR-326-5p | 1 | __...... | 6 | 75 |
