| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgggtag | 8 | ||
| MIMAT0032133 | sly-miR6027-5p | 1 | ........ | 8 | 100 |
| MIMAT0036802 | oha-miR-1c-3p | 2 | ......._ | 8 | 87 |
| MIMAT0036284 | chi-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0035154 | efu-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0032678 | ssa-miR-729-3p | 2 | ......._ | 8 | 87 |
| MIMAT0030578 | prd-miR-61-5p | 1 | ......._ | 7 | 87 |
| MIMAT0026316 | ccr-miR-729 | 2 | ......._ | 8 | 87 |
| MIMAT0028037 | mmu-miR-7066-3p | 8 | _....... | 2 | 87 |
| MIMAT0024164 | ggo-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0024058 | ptr-miR-3132 | 1 | _....... | 7 | 87 |
| MIMAT0022662 | ola-miR-729 | 2 | ......._ | 8 | 87 |
| MIMAT0022302 | hsa-miR-5591-3p | 8 | ......._ | 2 | 87 |
| MIMAT0020143 | cel-miR-4937 | 2 | _....... | 8 | 87 |
| MIMAT0016092 | ppy-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0017596 | aly-miR774a-3p.1 | 7 | ......._ | 1 | 87 |
| MIMAT0014997 | hsa-miR-3132 | 1 | _....... | 7 | 87 |
| MIMAT0013241 | eca-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0013608 | bmo-miR-279b-5p | 1 | ......._ | 7 | 87 |
| MIMAT0012425 | dsi-miR-1012-5p | 2 | _....... | 8 | 87 |
| MIMAT0009698 | aqu-miR-2020-5p | 1 | _....... | 7 | 87 |
| MIMAT0008308 | ptr-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0006760 | cfa-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0006499 | mml-miR-660-5p | 7 | ......._ | 1 | 87 |
| MIMAT0022942 | hsa-miR-1229-5p | 2 | _....... | 8 | 87 |
| MIMAT0005435 | cre-miR1144b | 1 | _....... | 7 | 87 |
| MIMAT0020906 | dme-miR-1012-5p | 1 | _....... | 7 | 87 |
| MIMAT0004344 | bta-miR-660 | 7 | ......._ | 1 | 87 |
| MIMAT0003758 | dre-miR-729 | 2 | ......._ | 8 | 87 |
| MIMAT0003338 | hsa-miR-660-5p | 7 | ......._ | 1 | 87 |
| MIMAT0023410 | hco-miR-5890f-3p | 8 | .g...... | 1 | 87 |
| MIMAT0023393 | hco-miR-5890d | 8 | .g...... | 1 | 87 |
| MIMAT0036400 | gma-miR9763 | 6 | ......__ | 1 | 75 |
| MIMAT0035604 | dvi-miR-993-5p | 6 | __...... | 1 | 75 |
| MIMAT0034711 | eca-miR-8908j | 6 | __...... | 1 | 75 |
| MIMAT0034708 | eca-miR-8908g | 6 | _......_ | 1 | 75 |
| MIMAT0034702 | eca-miR-8908e | 6 | _......_ | 1 | 75 |
| MIMAT0034694 | eca-miR-8908k | 6 | _......_ | 1 | 75 |
| MIMAT0034398 | cfa-miR-8891 | 6 | _......_ | 1 | 75 |
| MIMAT0033685 | sma-miR-8482-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033416 | str-miR-8380-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033366 | str-miR-8371-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033331 | str-miR-81a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032876 | ppc-miR-8221-5p | 3 | __...... | 8 | 75 |
| MIMAT0031420 | mmu-miR-8114 | 8 | ......__ | 3 | 75 |
| MIMAT0030423 | hsa-miR-7848-3p | 6 | __...... | 1 | 75 |
| MIMAT0029974 | mtr-miR2659k | 3 | ......__ | 8 | 75 |
| MIMAT0029973 | mtr-miR2659j | 3 | ......__ | 8 | 75 |
| MIMAT0029972 | mtr-miR2659i | 3 | ......__ | 8 | 75 |
| MIMAT0029971 | mtr-miR2659h | 3 | ......__ | 8 | 75 |
| MIMAT0029970 | mtr-miR2659g | 3 | ......__ | 8 | 75 |
| MIMAT0029336 | lja-miR7521 | 3 | ......__ | 8 | 75 |
| MIMAT0028739 | mdo-miR-7363-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028416 | mmu-miR-7224-5p | 1 | __...... | 6 | 75 |
| MIMAT0026385 | bma-miR-5882a | 1 | _......_ | 6 | 75 |
| MIMAT0027877 | mmu-miR-6987-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027623 | hsa-miR-6861-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027497 | hsa-miR-6798-3p | 6 | __...... | 1 | 75 |
| MIMAT0027410 | hsa-miR-6755-5p | 3 | __...... | 8 | 75 |
| MIMAT0025405 | tgu-miR-1759 | 3 | __...... | 8 | 75 |
| MIMAT0024787 | hbr-miR482a | 3 | ......__ | 8 | 75 |
| MIMAT0024785 | hbr-miR6167 | 6 | _......_ | 1 | 75 |
| MIMAT0024321 | mml-miR-1262-3p | 3 | ......__ | 8 | 75 |
| MIMAT0023539 | ame-miR-6000a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023060 | tur-miR-317-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019799 | hsa-miR-4701-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019042 | hsa-miR-4506 | 3 | ......__ | 8 | 75 |
| MIMAT0018745 | tca-miR-3848-3p | 7 | _......_ | 2 | 75 |
| MIMAT0018176 | mghv-miR-M1-15 | 8 | __...... | 3 | 75 |
| MIMAT0016655 | cin-miR-4083-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016626 | cin-miR-4069-5p | 6 | __...... | 1 | 75 |
| MIMAT0016534 | cin-miR-4020b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016240 | ppy-miR-1912 | 6 | _......_ | 1 | 75 |
| MIMAT0016186 | ppy-miR-1262 | 1 | ......__ | 6 | 75 |
| MIMAT0016171 | ppy-miR-1246 | 2 | ......__ | 7 | 75 |
| MIMAT0016160 | ppy-miR-1225-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017745 | esi-miR3454g-5p | 6 | _......_ | 1 | 75 |
| MIMAT0015090 | hsa-miR-1273d | 8 | ......__ | 3 | 75 |
| MIMAT0014995 | hsa-miR-3130-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014977 | hsa-miR-3115 | 3 | ......__ | 8 | 75 |
| MIMAT0014903 | mmu-miR-3091-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014675 | hma-miR-3007-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014417 | cqu-miR-279-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014354 | cqu-miR-1174 | 2 | _......_ | 7 | 75 |
| MIMAT0013201 | eca-miR-1912 | 6 | _......_ | 1 | 75 |
| MIMAT0013554 | cte-miR-2720-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013465 | mtr-miR2659f | 3 | ......__ | 8 | 75 |
| MIMAT0013464 | mtr-miR2659e | 3 | ......__ | 8 | 75 |
| MIMAT0013463 | mtr-miR2659d | 3 | ......__ | 8 | 75 |
| MIMAT0013462 | mtr-miR2659c | 3 | ......__ | 8 | 75 |
| MIMAT0013461 | mtr-miR2659b | 3 | ......__ | 8 | 75 |
| MIMAT0013460 | mtr-miR2659a | 3 | ......__ | 8 | 75 |
| MIMAT0013302 | mtr-miR2599 | 1 | _......_ | 6 | 75 |
| MIMAT0012506 | dsi-miR-1001-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012461 | dsi-miR-993-5p | 6 | __...... | 1 | 75 |
| MIMAT0012427 | dsi-miR-1003-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012263 | dps-miR-993-5p | 6 | __...... | 1 | 75 |
| MIMAT0015298 | bmo-miR-993a-5p | 7 | __...... | 2 | 75 |
| MIMAT0019181 | tca-miR-279b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0019125 | tca-miR-279a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007986 | ptr-miR-1262 | 1 | ......__ | 6 | 75 |
| MIMAT0007887 | hsa-miR-1912 | 6 | _......_ | 1 | 75 |
| MIMAT0026841 | mml-miR-197-5p | 2 | __...... | 7 | 75 |
| MIMAT0007666 | gga-miR-1759-5p | 3 | __...... | 8 | 75 |
| MIMAT0005775 | ptr-miR-510 | 6 | _......_ | 1 | 75 |
| MIMAT0005914 | hsa-miR-1262 | 1 | ......__ | 6 | 75 |
| MIMAT0005574 | mml-miR-1225-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005572 | hsa-miR-1225-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017326 | mmu-miR-1b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005383 | cre-miR1146 | 1 | ......__ | 6 | 75 |
| MIMAT0005170 | ppt-miR1053-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020902 | dme-miR-1003-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005521 | dme-miR-1001-5p | 1 | _......_ | 6 | 75 |
| MIMAT0002185 | kshv-miR-K12-9-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026529 | gga-miR-146a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022691 | hsa-miR-197-5p | 2 | __...... | 7 | 75 |
