| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atggtaat | 8 | ||
| MIMAT0017193 | rno-miR-451-3p | 1 | ........ | 8 | 100 |
| MIMAT0030507 | prd-miR-7877-3p | 7 | ......._ | 1 | 87 |
| MIMAT0030400 | ptc-miR7813 | 1 | _....... | 7 | 87 |
| MIMAT0026365 | bma-miR-5866 | 7 | ......._ | 1 | 87 |
| MIMAT0023558 | tca-miR-6008-3p | 7 | _....... | 1 | 87 |
| MIMAT0017858 | rno-miR-1193-5p | 1 | ......._ | 7 | 87 |
| MIMAT0011725 | ppc-miR-2270 | 2 | ......._ | 8 | 87 |
| MIMAT0025830 | gga-miR-458b-5p | 8 | ......c. | 1 | 87 |
| MIMAT0005989 | osa-miR1438 | 1 | .g...... | 8 | 87 |
| MIMAT0036703 | oha-miR-133a-3-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036074 | chi-miR-224-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035170 | efu-miR-9359 | 8 | __...... | 3 | 75 |
| MIMAT0035025 | efu-miR-1193 | 1 | ......__ | 6 | 75 |
| MIMAT0033258 | ppc-miR-8282c-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032898 | ppc-miR-8227-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031608 | bbe-miR-200b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030874 | stu-miR1886f | 1 | ......__ | 6 | 75 |
| MIMAT0030873 | stu-miR1886e | 1 | ......__ | 6 | 75 |
| MIMAT0030872 | stu-miR1886d | 1 | ......__ | 6 | 75 |
| MIMAT0030871 | stu-miR1886c | 1 | ......__ | 6 | 75 |
| MIMAT0030870 | stu-miR1886b | 1 | ......__ | 6 | 75 |
| MIMAT0030869 | stu-miR1886a | 1 | ......__ | 6 | 75 |
| MIMAT0030387 | ptc-miR7826 | 6 | _......_ | 1 | 75 |
| MIMAT0029536 | ipu-miR-7147 | 8 | ......__ | 3 | 75 |
| MIMAT0029332 | lja-miR7517 | 3 | ......__ | 8 | 75 |
| MIMAT0028543 | mdo-miR-7284-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028442 | mmu-miR-7237-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028205 | dre-miR-7147 | 8 | ......__ | 3 | 75 |
| MIMAT0026385 | bma-miR-5882a | 3 | __...... | 8 | 75 |
| MIMAT0026351 | bma-miR-5853 | 2 | ......__ | 7 | 75 |
| MIMAT0028108 | ddi-miR-7105 | 7 | _......_ | 2 | 75 |
| MIMAT0025480 | hsa-miR-6512-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025271 | ptc-miR482b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0024956 | hme-miR-2765 | 1 | _......_ | 6 | 75 |
| MIMAT0027333 | ppe-miR6291b | 7 | _......_ | 2 | 75 |
| MIMAT0027326 | ppe-miR6291a | 7 | _......_ | 2 | 75 |
| MIMAT0024800 | hvu-miR6177 | 6 | ......__ | 1 | 75 |
| MIMAT0027242 | pgi-miR6135b | 1 | _......_ | 6 | 75 |
| MIMAT0027241 | pgi-miR6135a | 1 | _......_ | 6 | 75 |
| MIMAT0024470 | mse-miR-2765 | 1 | _......_ | 6 | 75 |
| MIMAT0024287 | ggo-miR-556 | 8 | __...... | 3 | 75 |
| MIMAT0023551 | ame-miR-2765-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022454 | gma-miR5672 | 2 | ......__ | 7 | 75 |
| MIMAT0022269 | hsa-miR-5579-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022172 | osa-miR5536 | 2 | ......__ | 7 | 75 |
| MIMAT0022005 | aca-miR-5397-3p | 2 | _......_ | 7 | 75 |
| MIMAT0020025 | sko-miR-4822-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019025 | hsa-miR-4490 | 3 | _......_ | 8 | 75 |
| MIMAT0018259 | gma-miR4363 | 8 | __...... | 3 | 75 |
| MIMAT0018630 | tca-miR-2765-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018605 | ame-miR-3736 | 8 | __...... | 3 | 75 |
| MIMAT0016763 | cin-miR-4157-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016734 | cin-miR-4137-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016187 | ppy-miR-1263 | 1 | ......__ | 6 | 75 |
| MIMAT0014921 | mmu-miR-3101-5p | 8 | ......__ | 3 | 75 |
| MIMAT0014787 | api-miR-2765 | 1 | _......_ | 6 | 75 |
| MIMAT0014751 | api-miR-3016 | 3 | _......_ | 8 | 75 |
| MIMAT0014669 | hma-miR-3003b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014667 | hma-miR-3003a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014285 | aae-miR-2765 | 1 | _......_ | 6 | 75 |
| MIMAT0013751 | bmo-miR-2837 | 3 | ......__ | 8 | 75 |
| MIMAT0013640 | bmo-miR-2765 | 1 | _......_ | 6 | 75 |
| MIMAT0009815 | nve-miR-2045-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009783 | nve-miR-2031-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032081 | dvi-miR-309-5p | 1 | _......_ | 6 | 75 |
| MIMAT0008237 | ptr-miR-556 | 8 | __...... | 3 | 75 |
| MIMAT0007987 | ptr-miR-1263 | 1 | ......__ | 6 | 75 |
| MIMAT0007464 | gga-miR-1598 | 1 | ......__ | 6 | 75 |
| MIMAT0015259 | cin-miR-133-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007127 | oan-miR-429-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007031 | oan-miR-1367-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005915 | hsa-miR-1263 | 1 | ......__ | 6 | 75 |
| MIMAT0004897 | mmu-miR-654-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004266 | ath-miR844-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012111 | sme-miR-92-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004793 | hsa-miR-556-3p | 8 | __...... | 3 | 75 |
| MIMAT0031971 | dre-miR-133c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026537 | gga-miR-133c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003473 | mmu-miR-133a-5p | 3 | _......_ | 8 | 75 |
