| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgtacg | 7 | ||
| MIMAT0009807 | nve-miR-2042-3p | 7 | ....... | 1 | 100 |
| MIMAT0036801 | oha-miR-1c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0036253 | chi-miR-493-5p | 8 | ......_ | 3 | 85 |
| MIMAT0034929 | efu-miR-493 | 8 | ......_ | 3 | 85 |
| MIMAT0034233 | gra-miR8783 | 3 | _...... | 8 | 85 |
| MIMAT0033953 | esi-miR8618b | 7 | _...... | 2 | 85 |
| MIMAT0032741 | ssa-miR-8158-3p | 3 | _...... | 8 | 85 |
| MIMAT0030846 | stu-miR7979 | 8 | ......_ | 3 | 85 |
| MIMAT0030324 | bdi-miR7784b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030322 | bdi-miR7784a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025377 | ssc-miR-493-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024982 | hme-miR-3338 | 1 | ......_ | 6 | 85 |
| MIMAT0024505 | mse-miR-6097 | 2 | _...... | 7 | 85 |
| MIMAT0024432 | mse-miR-3338 | 1 | ......_ | 6 | 85 |
| MIMAT0024249 | ggo-miR-493 | 8 | ......_ | 3 | 85 |
| MIMAT0022576 | ola-miR-33 | 3 | ......_ | 8 | 85 |
| MIMAT0019237 | oar-miR-493-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018759 | tca-miR-3851a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018102 | hsa-miR-3678-5p | 8 | _...... | 3 | 85 |
| MIMAT0016552 | cin-miR-4031-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017440 | aly-miR160c-3p | 7 | _...... | 2 | 85 |
| MIMAT0017438 | aly-miR160b-3p | 7 | _...... | 2 | 85 |
| MIMAT0015526 | bmo-miR-3338-3p | 1 | ......_ | 6 | 85 |
| MIMAT0012039 | bta-miR-1434-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009706 | cte-miR-1995 | 6 | ......_ | 1 | 85 |
| MIMAT0026884 | mml-miR-493-5p | 8 | ......_ | 3 | 85 |
| MIMAT0004414 | rrv-miR-rR1-6-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017276 | mmu-miR-493-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017217 | rno-miR-493-5p | 8 | ......_ | 3 | 85 |
| MIMAT0002813 | hsa-miR-493-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031875 | ath-miR160c-3p | 6 | _...... | 1 | 85 |
