| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgtcgg | 7 | ||
| MIMAT0033461 | str-miR-360-3p | 1 | ....... | 7 | 100 |
| MIMAT0028195 | dev-miR-D20-5p | 2 | ....... | 8 | 100 |
| MIMAT0030734 | prd-miR-7938-5p | 3 | _...... | 8 | 85 |
| MIMAT0023263 | osa-miR5795 | 1 | ......_ | 6 | 85 |
| MIMAT0018812 | tca-miR-3864-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018111 | hsa-miR-3683 | 8 | ......_ | 3 | 85 |
| MIMAT0013816 | osa-miR2869 | 8 | _...... | 3 | 85 |
| MIMAT0011848 | bta-miR-2321 | 1 | _...... | 6 | 85 |
| MIMAT0009694 | aqu-miR-2018-5p | 1 | _...... | 6 | 85 |
| MIMAT0020355 | ath-miR868-5p | 3 | ......_ | 8 | 85 |
