Result for your query miRNA sequence
>rcmv-miR-r111.1-1
augugcu

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1atgtgct7
MIMAT0032772ath-miR81731.......7100
MIMAT0032736ssa-miR-8157-5p8.......2100
MIMAT0030973stu-miR164-3p2.......8100
MIMAT0029098gga-miR-7472-5p1.......7100
MIMAT0023022bra-miR57232.......8100
MIMAT0022325cin-miR-5601-5p1.......7100
MIMAT0037217ata-miR9776-3p6......_185
MIMAT0036836oha-miR-218-5p2_......785
MIMAT0036514tch-miR-218-5p2_......785
MIMAT0036066chi-miR-2182_......785
MIMAT0036034chi-miR-197-5p3_......885
MIMAT0035765tae-miR9657a-3p1_......685
MIMAT0035068efu-miR-218b2_......785
MIMAT0035036efu-miR-218a2_......785
MIMAT0035030efu-miR-3236......_185
MIMAT0034895efu-miR-92658_......385
MIMAT0034886efu-miR-9189c1_......685
MIMAT0034746eca-miR-91686_......185
MIMAT0034460eca-miR-89321_......685
MIMAT0034389cfa-miR-88853_......885
MIMAT0032524ssa-miR-218-5p2_......785
MIMAT0031667bbe-miR-31-3p3_......885
MIMAT0031637bbe-miR-2070-3p1......_685
MIMAT0030991hsa-miR-80646_......185
MIMAT0030394ptc-miR78383......_885
MIMAT0030045oar-miR-218a2_......785
MIMAT0032227lva-miR-2006-3p7_......285
MIMAT0032180pmi-miR-2006-3p7_......285
MIMAT0029473ipu-miR-218b2_......785
MIMAT0029472ipu-miR-218a2_......785
MIMAT0028983oan-miR-7417-3p3_......885
MIMAT0028225hsa-miR-7157-3p3_......885
MIMAT0026272ccr-miR-218b2_......785
MIMAT0026271ccr-miR-218a2_......785
MIMAT0027957mmu-miR-7026-3p1_......685
MIMAT0027955mmu-miR-7025-3p7_......285
MIMAT0027921mmu-miR-7008-3p1_......685
MIMAT0027907mmu-miR-7002-3p2_......785
MIMAT0027831mmu-miR-6965-3p3_......885
MIMAT0027376hsa-miR-6737-3p3_......885
MIMAT0025636gga-miR-6565-3p3_......885
MIMAT0025371ssc-miR-2182_......785
MIMAT0023855cgr-miR-218a2_......785
MIMAT0023688ame-miR-6047b6_......185
MIMAT0023381hco-miR-53528......_385
MIMAT0022609ola-miR-218b2_......785
MIMAT0022529ola-miR-218a2_......785
MIMAT0022686hvsa-miR-HSUR2-5p3_......885
MIMAT0021880aca-miR-218-5p2_......785
MIMAT0021563asu-miR-5352-3p8......_385
MIMAT0021378isc-miR-53083_......885
MIMAT0020611mmu-miR-51042_......785
MIMAT0020589ssc-miR-218b2_......785
MIMAT0021040hsa-miR-5008-3p3_......885
MIMAT0020514dme-miR-4908-3p2_......785
MIMAT0020048sko-miR-2006-3p7_......285
MIMAT0019600pma-miR-45687_......285
MIMAT0019531pma-miR-218b2_......785
MIMAT0019529pma-miR-218a-5p2_......785
MIMAT0019364pma-miR-1a-5p1......_685
MIMAT0022737hsa-miR-550b-2-5p1......_685
MIMAT0018815tca-miR-3865-3p8_......385
MIMAT0018635tca-miR-3806-3p1......_685
MIMAT0018549ame-miR-37738_......385
MIMAT0022961ssc-miR-218-5p2_......785
MIMAT0016843cin-let-7f-3p8......_385
MIMAT0016555cin-miR-4033-5p8_......385
MIMAT0016524cin-miR-4017-5p1_......685
MIMAT0017890rno-miR-3590-3p7_......285
MIMAT0016074ppy-miR-6361_......685
MIMAT0015485bmo-miR-3297-5p6......_185
MIMAT0014522tgu-miR-218-5p2_......785
MIMAT0014383cqu-miR-305-3p8......_385
MIMAT0014362cqu-miR-988-5p3_......885
MIMAT0014280aae-miR-988-5p2_......785
MIMAT0014250aae-miR-305-3p8......_385
MIMAT0012928eca-miR-2182_......785
MIMAT0012037bta-miR-24553_......885
MIMAT0011956bta-miR-24008_......385
MIMAT0011447cel-miR-2216-5p6......_185
MIMAT0011302dre-miR-455-2-5p3......_885
MIMAT0011256sme-miR-2162-5p1_......685
MIMAT0010151mcv-miR-M1-3p1_......685
MIMAT0019171bfl-miR-2070-3p1......_685
MIMAT0009769nve-miR-2024f-3p8......_385
MIMAT0009767nve-miR-2024e-3p8......_385
MIMAT0009747spu-miR-20067_......285
MIMAT0019141bfl-miR-31-3p2_......785
MIMAT0009284bta-miR-3236......_185
MIMAT0032066dvi-miR-305-3p8......_385
MIMAT0006672cfa-miR-2182_......785
MIMAT0006479mml-miR-6361_......685
MIMAT0007587gga-miR-16957_......285
MIMAT0007422gga-miR-15636......_185
MIMAT0006815oan-miR-218-5p2_......785
MIMAT0004133mdo-miR-218-5p2_......785
MIMAT0032015cel-miR-785-5p6_......185
MIMAT0003798bta-miR-2182_......785
MIMAT0003631xtr-miR-2182_......785
MIMAT0003445rlcv-miR-rL1-14-3p8......_385
MIMAT0003306hsa-miR-6361_......685
MIMAT0026618hsa-miR-585-5p8_......385
MIMAT0003162rno-miR-1-5p6......_185
MIMAT0002994tni-miR-218a2_......785
MIMAT0002993fru-miR-218a2_......785
MIMAT0002986tni-miR-218b2_......785
MIMAT0002985fru-miR-218b2_......785
MIMAT0022926osa-miR528-3p3_......885
MIMAT0002574mml-miR-218-5p2_......785
MIMAT0002573mne-miR-2182_......785
MIMAT0002572lla-miR-2182_......785
MIMAT0002571sla-miR-2182_......785
MIMAT0002570ptr-miR-2182_......785
MIMAT0002569ppy-miR-2182_......785
MIMAT0002568lca-miR-2182_......785
MIMAT0002567ppa-miR-2182_......785
MIMAT0002566age-miR-2182_......785
MIMAT0002565ggo-miR-2182_......785
MIMAT0002139ssc-miR-3236......_185
MIMAT0001869dre-miR-218b2_......785
MIMAT0001868dre-miR-218a2_......785
MIMAT0015138zma-miR164b-3p1......_685
MIMAT0001144gga-miR-218-5p2_......785
MIMAT0000888rno-miR-218a-5p2_......785
MIMAT0000663mmu-miR-218-5p2_......785
MIMAT0020827dme-miR-305-3p8......_385
MIMAT0000275hsa-miR-218-5p2_......785