| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atgtgtaa | 8 | ||
| MIMAT0035418 | nve-miR-9457 | 7 | ......._ | 1 | 87 |
| MIMAT0034597 | eca-miR-9053 | 7 | ......._ | 1 | 87 |
| MIMAT0032773 | ath-miR8174 | 1 | ......._ | 7 | 87 |
| MIMAT0030293 | bdi-miR7771-3p | 1 | ......._ | 7 | 87 |
| MIMAT0022247 | sbi-miR5565c | 7 | ......._ | 1 | 87 |
| MIMAT0020078 | spu-miR-4855 | 1 | _....... | 7 | 87 |
| MIMAT0020072 | spu-miR-4849 | 1 | _....... | 7 | 87 |
| MIMAT0019754 | hsa-miR-4672 | 7 | _....... | 1 | 87 |
| MIMAT0018357 | hsa-miR-3941 | 7 | _....... | 1 | 87 |
| MIMAT0018793 | tca-miR-3860-3p | 2 | _....... | 8 | 87 |
| MIMAT0018541 | ame-miR-3767 | 7 | ......._ | 1 | 87 |
| MIMAT0018525 | ame-miR-3755 | 2 | ......._ | 8 | 87 |
| MIMAT0015002 | hsa-miR-466 | 8 | ......._ | 2 | 87 |
| MIMAT0017358 | rno-miR-511-3p | 2 | ......._ | 8 | 87 |
| MIMAT0012365 | dps-miR-2552-3p | 1 | ......._ | 7 | 87 |
| MIMAT0009758 | nve-miR-2024a-3p | 7 | _....... | 1 | 87 |
| MIMAT0026893 | mml-miR-511-3p | 2 | ......._ | 8 | 87 |
| MIMAT0015247 | cin-let-7a-1-3p | 1 | _....... | 7 | 87 |
| MIMAT0017281 | mmu-miR-511-3p | 2 | ......._ | 8 | 87 |
| MIMAT0026606 | hsa-miR-511-3p | 2 | ......._ | 8 | 87 |
| MIMAT0034580 | eca-miR-9038 | 8 | ......g. | 1 | 87 |
| MIMAT0034106 | gra-miR8716 | 1 | ......c. | 8 | 87 |
| MIMAT0030881 | stu-miR7995 | 8 | .c...... | 1 | 87 |
| MIMAT0017853 | rno-miR-3572 | 8 | .a...... | 1 | 87 |
| MIMAT0013749 | bmo-miR-2835 | 8 | ......g. | 1 | 87 |
| MIMAT0037049 | ssc-miR-9831-3p | 2 | _......_ | 7 | 75 |
| MIMAT0037033 | ssc-miR-9815-3p | 2 | __...... | 7 | 75 |
| MIMAT0036610 | tch-miR-9771n | 3 | ......__ | 8 | 75 |
| MIMAT0036361 | gma-miR9741 | 2 | ......__ | 7 | 75 |
| MIMAT0036071 | chi-miR-223-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035265 | gsa-miR-219-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033858 | atr-miR8575 | 3 | ......__ | 8 | 75 |
| MIMAT0033841 | atr-miR8565g | 2 | ......__ | 7 | 75 |
| MIMAT0033595 | sma-miR-8443-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033295 | ppc-miR-8252b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032619 | ssa-miR-33a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030165 | bdi-miR7720-3p | 8 | __...... | 3 | 75 |
| MIMAT0029672 | cbn-miR-7630 | 6 | __...... | 1 | 75 |
| MIMAT0029025 | oan-miR-7435-3p | 8 | __...... | 3 | 75 |
| MIMAT0028936 | mdo-miR-7398i-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028928 | mdo-miR-7398j-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028922 | mdo-miR-7398d-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028920 | mdo-miR-7398q-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031054 | mdo-miR-7398a-5-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031053 | mdo-miR-7398a-4-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028900 | mdo-miR-7398a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028916 | mdo-miR-7398b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028914 | mdo-miR-7398c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028912 | mdo-miR-7398m-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028910 | mdo-miR-7398l-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028902 | mdo-miR-7398r-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031051 | mdo-miR-7398a-1-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028886 | mdo-miR-7394a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028427 | mmu-miR-7229-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028369 | mml-miR-7202-3p | 8 | __...... | 3 | 75 |
| MIMAT0026399 | sbi-miR5565g-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025153 | mmu-miR-6401 | 6 | __...... | 1 | 75 |
| MIMAT0024874 | osa-miR6251 | 1 | _......_ | 6 | 75 |
| MIMAT0024856 | rno-miR-6216 | 8 | _......_ | 3 | 75 |
| MIMAT0024120 | ggo-miR-92b | 8 | __...... | 3 | 75 |
| MIMAT0022253 | sbi-miR5565b | 7 | ......__ | 2 | 75 |
| MIMAT0022252 | sbi-miR5565a | 7 | ......__ | 2 | 75 |
| MIMAT0019980 | hsa-miR-4801 | 6 | _......_ | 1 | 75 |
| MIMAT0019960 | hsa-miR-4789-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019830 | hsa-miR-4717-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019703 | hsa-miR-4643 | 7 | ......__ | 2 | 75 |
| MIMAT0018444 | hsa-miR-642b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0018881 | tca-miR-3891-3p | 2 | __...... | 7 | 75 |
| MIMAT0018762 | tca-miR-3853-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016584 | cin-miR-4047-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016541 | cin-miR-4025-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017851 | rno-miR-3571 | 6 | _......_ | 1 | 75 |
| MIMAT0017824 | rno-miR-466d | 1 | ......__ | 6 | 75 |
| MIMAT0019215 | hsa-miR-3177-5p | 1 | _......_ | 6 | 75 |
| MIMAT0014891 | mmu-miR-466p-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014885 | mmu-miR-466o-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015317 | zma-miR164e-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011453 | cel-miR-2209b-5p | 2 | __...... | 7 | 75 |
| MIMAT0011433 | cel-miR-2209c-5p | 3 | __...... | 8 | 75 |
| MIMAT0011431 | cel-miR-2209a-5p | 3 | __...... | 8 | 75 |
| MIMAT0011314 | dre-miR-2193 | 2 | ......__ | 7 | 75 |
| MIMAT0007859 | aga-miR-1889 | 6 | ......__ | 1 | 75 |
| MIMAT0015248 | cin-let-7a-2-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006048 | odi-miR-1495 | 2 | __...... | 7 | 75 |
| MIMAT0005859 | mmu-miR-1198-5p | 2 | ......__ | 7 | 75 |
| MIMAT0005837 | mmu-miR-1187 | 2 | ......__ | 7 | 75 |
| MIMAT0005834 | mmu-miR-466i-3p | 7 | _......_ | 2 | 75 |
| MIMAT0005278 | rno-miR-466b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004465 | mdv2-miR-M22-5p | 8 | __...... | 3 | 75 |
| MIMAT0004882 | mmu-miR-466f-3p | 8 | _......_ | 3 | 75 |
| MIMAT0004879 | mmu-miR-466e-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004877 | mmu-miR-466c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004875 | mmu-miR-466b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003926 | mdv1-miR-M5-3p | 1 | _......_ | 6 | 75 |
| MIMAT0017253 | mmu-miR-669c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020924 | hsa-miR-642a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0004759 | mmu-miR-466a-5p | 2 | ......__ | 7 | 75 |
