| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attacagg | 8 | ||
| MIMAT0002182 | kshv-miR-K12-1-5p | 1 | ........ | 8 | 100 |
| MIMAT0036806 | oha-miR-20b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0032521 | ssa-miR-2187-3p | 1 | _....... | 7 | 87 |
| MIMAT0025465 | hsa-miR-6504-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027116 | mml-miR-1243-5p | 8 | _....... | 2 | 87 |
| MIMAT0022346 | cin-miR-5609-3p | 2 | _....... | 8 | 87 |
| MIMAT0021864 | aca-miR-20b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0021179 | mtr-miR5222 | 1 | _....... | 7 | 87 |
| MIMAT0020600 | hsa-miR-5095 | 1 | _....... | 7 | 87 |
| MIMAT0027017 | tgu-miR-20b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0011297 | dre-miR-2187-3p | 1 | _....... | 7 | 87 |
| MIMAT0009979 | hsa-miR-2054 | 7 | ......._ | 1 | 87 |
| MIMAT0006854 | oan-miR-20b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0005032 | cel-miR-1019-3p | 7 | ......._ | 1 | 87 |
| MIMAT0026551 | gga-miR-20b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0037265 | rno-miR-486 | 7 | __...... | 2 | 75 |
| MIMAT0036198 | chi-miR-380-3p | 8 | ......__ | 3 | 75 |
| MIMAT0035806 | tae-miR6197-5p | 7 | _......_ | 2 | 75 |
| MIMAT0035679 | bra-miR9555b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035191 | efu-miR-9366 | 1 | __...... | 6 | 75 |
| MIMAT0035113 | efu-miR-9344 | 8 | __...... | 3 | 75 |
| MIMAT0035060 | efu-miR-486 | 7 | __...... | 2 | 75 |
| MIMAT0034956 | efu-miR-9295 | 7 | _......_ | 2 | 75 |
| MIMAT0034495 | eca-miR-8961 | 1 | _......_ | 6 | 75 |
| MIMAT0034237 | gra-miR8785 | 3 | _......_ | 8 | 75 |
| MIMAT0033896 | atr-miR8607 | 8 | ......__ | 3 | 75 |
| MIMAT0033767 | pxy-miR-8525 | 7 | __...... | 2 | 75 |
| MIMAT0032816 | cel-miR-8201-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030838 | prd-miR-7968-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030616 | prd-miR-993-5p | 7 | __...... | 2 | 75 |
| MIMAT0030337 | hhi-miR-7792 | 6 | ......__ | 1 | 75 |
| MIMAT0030276 | bdi-miR7708b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030134 | bdi-miR7708a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030031 | oar-miR-10b | 8 | __...... | 3 | 75 |
| MIMAT0029999 | mtr-miR7699-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029827 | mmu-miR-7660-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029627 | crm-miR-7609 | 6 | ......__ | 1 | 75 |
| MIMAT0029025 | oan-miR-7435-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028646 | mdo-miR-7323-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028213 | hsa-miR-7151-3p | 2 | __...... | 7 | 75 |
| MIMAT0026401 | sbi-miR5568c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027724 | mmu-miR-6912-5p | 1 | __...... | 6 | 75 |
| MIMAT0025608 | gga-miR-3607-3p | 6 | _......_ | 1 | 75 |
| MIMAT0024953 | hme-miR-2756 | 8 | __...... | 3 | 75 |
| MIMAT0024932 | hme-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0024798 | hvu-miR1130 | 7 | _......_ | 2 | 75 |
| MIMAT0027107 | mml-miR-1185-3p | 3 | __...... | 8 | 75 |
| MIMAT0024202 | ggo-miR-582 | 1 | _......_ | 6 | 75 |
| MIMAT0024195 | ggo-miR-380 | 8 | ......__ | 3 | 75 |
| MIMAT0024149 | ggo-miR-486 | 7 | __...... | 2 | 75 |
| MIMAT0024120 | ggo-miR-92b | 2 | ......__ | 7 | 75 |
| MIMAT0023967 | cgr-miR-486-5p | 7 | __...... | 2 | 75 |
| MIMAT0023586 | nta-miR6019b | 1 | __...... | 6 | 75 |
| MIMAT0023583 | nta-miR6019a | 1 | __...... | 6 | 75 |
| MIMAT0026459 | hhv6b-miR-Ro6-2-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023110 | tur-miR-5738-5p | 8 | ......__ | 3 | 75 |
| MIMAT0022683 | hvsa-miR-HSUR5-3p | 1 | _......_ | 6 | 75 |
| MIMAT0021531 | asu-miR-993-5p | 8 | __...... | 3 | 75 |
| MIMAT0021106 | osa-miR5156 | 8 | __...... | 3 | 75 |
| MIMAT0019254 | oar-miR-380-3p | 8 | ......__ | 3 | 75 |
| MIMAT0018416 | nlo-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0018306 | gma-miR4343b | 3 | _......_ | 8 | 75 |
| MIMAT0018910 | tca-miR-3903-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018839 | tca-miR-3873-3p | 7 | ......__ | 2 | 75 |
| MIMAT0018667 | tca-miR-3820-3p | 6 | __...... | 1 | 75 |
| MIMAT0018167 | mghv-miR-M1-10-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018114 | hsa-miR-3686 | 8 | _......_ | 3 | 75 |
| MIMAT0017985 | hsa-miR-3607-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016702 | cin-miR-4112-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016519 | cin-miR-4014-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016042 | ppy-miR-600 | 3 | _......_ | 8 | 75 |
| MIMAT0016024 | ppy-miR-582-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016003 | ppy-miR-556-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015904 | ppy-miR-486-5p | 7 | __...... | 2 | 75 |
| MIMAT0015870 | ppy-miR-380 | 8 | ......__ | 3 | 75 |
| MIMAT0015676 | nvi-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0015605 | bmo-miR-3401 | 2 | _......_ | 7 | 75 |
| MIMAT0015505 | bmo-miR-3317 | 1 | __...... | 6 | 75 |
| MIMAT0015498 | bmo-miR-3309 | 6 | ......__ | 1 | 75 |
| MIMAT0015477 | bmo-miR-3290 | 8 | ......__ | 3 | 75 |
| MIMAT0014943 | mmu-miR-486b-5p | 7 | __...... | 2 | 75 |
| MIMAT0014404 | cqu-miR-10-5p | 8 | __...... | 3 | 75 |
| MIMAT0014277 | aae-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0014128 | api-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0013886 | ssc-miR-486 | 7 | __...... | 2 | 75 |
| MIMAT0013825 | osa-miR2875 | 3 | _......_ | 8 | 75 |
| MIMAT0013186 | eca-miR-486-5p | 7 | __...... | 2 | 75 |
| MIMAT0013148 | eca-miR-380 | 8 | ......__ | 3 | 75 |
| MIMAT0013103 | eca-miR-582-5p | 1 | _......_ | 6 | 75 |
| MIMAT0013623 | bmo-miR-2756-5p | 8 | __...... | 3 | 75 |
| MIMAT0012393 | dps-miR-2565-3p | 8 | __...... | 3 | 75 |
| MIMAT0012299 | dps-miR-2514 | 1 | _......_ | 6 | 75 |
| MIMAT0012225 | dps-miR-971-5p | 7 | _......_ | 2 | 75 |
| MIMAT0011909 | bta-miR-2367-5p | 8 | __...... | 3 | 75 |
| MIMAT0009837 | cfa-miR-10b | 7 | __...... | 2 | 75 |
| MIMAT0009351 | bta-miR-582 | 1 | _......_ | 6 | 75 |
| MIMAT0009329 | bta-miR-486 | 7 | __...... | 2 | 75 |
| MIMAT0009082 | dya-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0009033 | dwi-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008960 | dvi-miR-10-5p | 8 | __...... | 3 | 75 |
| MIMAT0008887 | dsi-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008784 | dse-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008754 | dpe-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008693 | dmo-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008601 | dgr-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008549 | der-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008476 | dan-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0008269 | ptr-miR-600 | 3 | _......_ | 8 | 75 |
| MIMAT0008160 | ptr-miR-486 | 7 | __...... | 2 | 75 |
| MIMAT0008132 | ptr-miR-380 | 8 | ......__ | 3 | 75 |
| MIMAT0006717 | cfa-miR-380 | 8 | ......__ | 3 | 75 |
| MIMAT0011132 | cfa-miR-486 | 7 | __...... | 2 | 75 |
| MIMAT0006457 | mml-miR-600 | 3 | _......_ | 8 | 75 |
| MIMAT0006443 | mml-miR-582-5p | 1 | _......_ | 6 | 75 |
| MIMAT0006425 | mml-miR-556-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006344 | mml-miR-486-5p | 7 | __...... | 2 | 75 |
| MIMAT0006309 | mml-miR-380-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007686 | gga-miR-1775-3p | 7 | __...... | 2 | 75 |
| MIMAT0026765 | hsa-miR-1537-5p | 8 | _......_ | 3 | 75 |
| MIMAT0006048 | odi-miR-1495 | 8 | ......__ | 3 | 75 |
| MIMAT0005400 | cre-miR1153-3p.2 | 7 | ......__ | 2 | 75 |
| MIMAT0020868 | dme-miR-971-5p | 7 | _......_ | 2 | 75 |
| MIMAT0004419 | ame-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0003804 | bta-miR-380-3p | 8 | ......__ | 3 | 75 |
| MIMAT0004195 | bmo-miR-10-5p | 8 | __...... | 3 | 75 |
| MIMAT0003446 | rlcv-miR-rL1-15-3p | 7 | __...... | 2 | 75 |
| MIMAT0003268 | hsa-miR-600 | 3 | _......_ | 8 | 75 |
| MIMAT0003247 | hsa-miR-582-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003130 | mmu-miR-486a-5p | 7 | __...... | 2 | 75 |
| MIMAT0002177 | hsa-miR-486-5p | 7 | __...... | 2 | 75 |
| MIMAT0002070 | ptc-miR475d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0002068 | ptc-miR475b-3p | 1 | _......_ | 6 | 75 |
| MIMAT0002067 | ptc-miR475a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0001507 | aga-miR-263a | 6 | ......__ | 1 | 75 |
| MIMAT0001497 | aga-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0001214 | dps-miR-10 | 8 | __...... | 3 | 75 |
| MIMAT0000783 | rno-miR-10b-5p | 7 | __...... | 2 | 75 |
| MIMAT0000735 | hsa-miR-380-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000115 | dme-miR-10-5p | 8 | __...... | 3 | 75 |
