| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attagatt | 8 | ||
| MIMAT0035343 | gsa-miR-9398-3p | 1 | ........ | 8 | 100 |
| MIMAT0035859 | bra-miR403-3p | 1 | _....... | 7 | 87 |
| MIMAT0034198 | gra-miR8764 | 1 | _....... | 7 | 87 |
| MIMAT0033879 | atr-miR8592 | 7 | ......._ | 1 | 87 |
| MIMAT0032687 | ssa-miR-737-3p | 7 | _....... | 1 | 87 |
| MIMAT0031511 | ppe-miR403 | 1 | _....... | 7 | 87 |
| MIMAT0031387 | aly-miR403b-3p | 1 | _....... | 7 | 87 |
| MIMAT0030988 | hsa-miR-8061 | 2 | _....... | 8 | 87 |
| MIMAT0030370 | ptc-miR403d | 1 | _....... | 7 | 87 |
| MIMAT0029287 | mes-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0029286 | mes-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0026012 | mdm-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0026011 | mdm-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0025520 | hpe-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0025519 | har-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0025518 | htu-miR403e | 1 | _....... | 7 | 87 |
| MIMAT0025517 | htu-miR403d | 1 | _....... | 7 | 87 |
| MIMAT0025516 | htu-miR403c | 1 | _....... | 7 | 87 |
| MIMAT0025515 | htu-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0025514 | htu-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0023644 | bna-miR403 | 1 | _....... | 7 | 87 |
| MIMAT0021614 | gma-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0021613 | gma-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0020445 | tcc-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0020444 | tcc-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0019906 | hsa-miR-4760-5p | 2 | _....... | 8 | 87 |
| MIMAT0018471 | csi-miR403 | 1 | _....... | 7 | 87 |
| MIMAT0017586 | aly-miR403a-3p | 1 | _....... | 7 | 87 |
| MIMAT0014203 | rco-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0014202 | rco-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0006574 | vvi-miR403f | 1 | _....... | 7 | 87 |
| MIMAT0006573 | vvi-miR403e | 1 | _....... | 7 | 87 |
| MIMAT0006572 | vvi-miR403d | 1 | _....... | 7 | 87 |
| MIMAT0006571 | vvi-miR403c | 1 | _....... | 7 | 87 |
| MIMAT0006570 | vvi-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0006569 | vvi-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0003944 | ptc-miR403c-3p | 1 | _....... | 7 | 87 |
| MIMAT0002057 | ptc-miR403b | 1 | _....... | 7 | 87 |
| MIMAT0002056 | ptc-miR403a | 1 | _....... | 7 | 87 |
| MIMAT0001004 | ath-miR403-3p | 1 | _....... | 7 | 87 |
| MIMAT0030956 | stu-miR8042 | 1 | ......c. | 8 | 87 |
| MIMAT0016017 | ppy-miR-576-5p | 8 | ......a. | 1 | 87 |
| MIMAT0006436 | mml-miR-576-5p | 8 | ......a. | 1 | 87 |
| MIMAT0003241 | hsa-miR-576-5p | 8 | ......a. | 1 | 87 |
| MIMAT0026497 | gga-miR-20a-3p | 8 | .g...... | 1 | 87 |
| MIMAT0036184 | chi-miR-376a | 2 | __...... | 7 | 75 |
| MIMAT0036079 | chi-miR-2284c | 8 | __...... | 3 | 75 |
| MIMAT0035788 | tae-miR1122c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035647 | dvi-miR-975-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035434 | sly-miR403-3p | 2 | __...... | 7 | 75 |
| MIMAT0035339 | gsa-miR-9396-3p | 6 | ......__ | 1 | 75 |
| MIMAT0034157 | gra-miR7484f | 7 | _......_ | 2 | 75 |
| MIMAT0034012 | gra-miR8653a | 8 | __...... | 3 | 75 |
| MIMAT0033842 | atr-miR8566 | 1 | ......__ | 6 | 75 |
| MIMAT0033564 | sma-miR-8430-5p | 7 | _......_ | 2 | 75 |
| MIMAT0033547 | sma-miR-8421-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031550 | ppe-miR8128-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031516 | ppe-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0031273 | stu-miR827-3p | 1 | _......_ | 6 | 75 |
| MIMAT0030392 | ptc-miR7833 | 3 | ......__ | 8 | 75 |
| MIMAT0030372 | ptc-miR7814 | 1 | __...... | 6 | 75 |
| MIMAT0029302 | mes-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0026028 | mdm-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0027297 | ppe-miR6267b | 1 | ......__ | 6 | 75 |
| MIMAT0024816 | hvu-miR6191 | 1 | __...... | 6 | 75 |
| MIMAT0024725 | nta-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0023470 | hco-miR-5946b | 1 | __...... | 6 | 75 |
| MIMAT0022222 | mtr-miR5559-3p | 6 | ......__ | 1 | 75 |
| MIMAT0022220 | mtr-miR5558-3p | 1 | __...... | 6 | 75 |
| MIMAT0021680 | sbi-miR5382 | 8 | __...... | 3 | 75 |
| MIMAT0021319 | mtr-miR5280 | 3 | ......__ | 8 | 75 |
| MIMAT0021249 | mtr-miR2643b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020279 | ssp-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0020703 | bdi-miR827-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020606 | mmu-miR-5099 | 1 | _......_ | 6 | 75 |
| MIMAT0020449 | tcc-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0019976 | hsa-miR-4799-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019286 | oar-miR-376a-5p | 1 | __...... | 6 | 75 |
| MIMAT0018485 | csi-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0018537 | ame-miR-3764 | 1 | __...... | 6 | 75 |
| MIMAT0016694 | cin-miR-4107-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016332 | ahy-miR3509-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015715 | ssc-miR-376a-5p | 2 | __...... | 7 | 75 |
| MIMAT0017733 | aly-miR3449-5p | 3 | __...... | 8 | 75 |
| MIMAT0017719 | aly-miR3443-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017608 | aly-miR827-3p | 1 | _......_ | 6 | 75 |
| MIMAT0015607 | bmo-miR-3403 | 8 | __...... | 3 | 75 |
| MIMAT0014880 | mmu-miR-3086-5p | 1 | __...... | 6 | 75 |
| MIMAT0014343 | ghr-miR827c | 1 | _......_ | 6 | 75 |
| MIMAT0014342 | ghr-miR827b | 1 | _......_ | 6 | 75 |
| MIMAT0014341 | ghr-miR827a | 1 | _......_ | 6 | 75 |
| MIMAT0014311 | aae-miR-282-5p | 6 | __...... | 1 | 75 |
| MIMAT0014031 | zma-miR827-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013691 | bmo-miR-2792-3p | 1 | __...... | 6 | 75 |
| MIMAT0013333 | mtr-miR1509b | 8 | __...... | 3 | 75 |
| MIMAT0013266 | mtr-miR2590f | 6 | _......_ | 1 | 75 |
| MIMAT0013265 | mtr-miR2590e | 6 | _......_ | 1 | 75 |
| MIMAT0013264 | mtr-miR2590d | 6 | _......_ | 1 | 75 |
| MIMAT0013263 | mtr-miR2590c | 6 | _......_ | 1 | 75 |
| MIMAT0013262 | mtr-miR2590b | 6 | _......_ | 1 | 75 |
| MIMAT0013261 | mtr-miR2590a | 6 | _......_ | 1 | 75 |
| MIMAT0011946 | bta-miR-2393 | 1 | __...... | 6 | 75 |
| MIMAT0010034 | mtr-miR1509a-5p | 8 | __...... | 3 | 75 |
| MIMAT0009981 | osa-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0009690 | aqu-miR-2016-5p | 1 | __...... | 6 | 75 |
| MIMAT0017351 | mmu-miR-1981-3p | 7 | _......_ | 2 | 75 |
| MIMAT0009071 | dya-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0009026 | dwi-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0008883 | dsi-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0008792 | dse-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0008716 | dpe-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0008645 | dmo-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0008614 | dgr-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0008509 | der-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0007833 | osa-miR1862e | 2 | __...... | 7 | 75 |
| MIMAT0031082 | mml-miR-376a-2-5p | 2 | __...... | 7 | 75 |
| MIMAT0026861 | mml-miR-376a-1-5p | 2 | __...... | 7 | 75 |
| MIMAT0007390 | gma-miR1528 | 2 | __...... | 7 | 75 |
| MIMAT0006003 | ptc-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0005373 | tae-miR1138 | 3 | _......_ | 8 | 75 |
| MIMAT0005120 | ppt-miR1028c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005118 | ppt-miR1028b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005116 | ppt-miR1028a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004468 | mdv2-miR-M24-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004243 | ath-miR827 | 1 | _......_ | 6 | 75 |
| MIMAT0012114 | sme-miR-125b-3p | 3 | __...... | 8 | 75 |
| MIMAT0003714 | ebv-miR-BART16 | 1 | _......_ | 6 | 75 |
| MIMAT0003197 | rno-miR-376a-5p | 3 | __...... | 8 | 75 |
| MIMAT0022928 | hsa-miR-376a-2-5p | 3 | __...... | 8 | 75 |
| MIMAT0001514 | aga-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0001246 | dps-miR-282 | 6 | __...... | 1 | 75 |
| MIMAT0003387 | mmu-miR-376a-5p | 3 | __...... | 8 | 75 |
| MIMAT0003386 | hsa-miR-376a-5p | 2 | __...... | 7 | 75 |
