| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attcgct | 7 | ||
| MIMAT0020219 | dme-miR-4984-5p | 7 | ....... | 1 | 100 |
| MIMAT0011449 | cel-miR-1832b-5p | 8 | ....... | 2 | 100 |
| MIMAT0033651 | sma-miR-8466-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031846 | cpa-miR8149 | 6 | _...... | 1 | 85 |
| MIMAT0031388 | aly-miR173b-5p | 1 | _...... | 6 | 85 |
| MIMAT0030619 | prd-miR-7903-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030299 | bdi-miR7774-3p | 7 | _...... | 2 | 85 |
| MIMAT0030224 | bdi-miR7742-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029793 | mmu-miR-6546-3p | 7 | _...... | 2 | 85 |
| MIMAT0022339 | cin-miR-5606-5p | 8 | _...... | 3 | 85 |
| MIMAT0021718 | aca-miR-10a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017866 | rno-miR-3578 | 6 | ......_ | 1 | 85 |
| MIMAT0017789 | esi-miR3468-5p | 7 | _...... | 2 | 85 |
| MIMAT0017579 | aly-miR399e-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017577 | aly-miR399d-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017531 | aly-miR173a-5p | 1 | _...... | 6 | 85 |
| MIMAT0014701 | hsv2-miR-H19 | 1 | _...... | 6 | 85 |
| MIMAT0011275 | sme-miR-2174 | 3 | _...... | 8 | 85 |
| MIMAT0006771 | cel-miR-1829c-5p | 7 | _...... | 2 | 85 |
| MIMAT0007561 | gga-miR-1676-3p | 8 | _...... | 3 | 85 |
| MIMAT0005677 | vvi-miR169y | 7 | _...... | 2 | 85 |
| MIMAT0017187 | mghv-miR-M1-3-5p | 6 | _...... | 1 | 85 |
| MIMAT0000206 | ath-miR173-5p | 1 | _...... | 6 | 85 |
