| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attctgc | 7 | ||
| MIMAT0033408 | str-miR-8378-5p | 2 | ....... | 8 | 100 |
| MIMAT0019299 | oar-miR-544-3p | 1 | ....... | 7 | 100 |
| MIMAT0018648 | tca-miR-3813-5p | 2 | ....... | 8 | 100 |
| MIMAT0015994 | ppy-miR-544 | 1 | ....... | 7 | 100 |
| MIMAT0013170 | eca-miR-544 | 1 | ....... | 7 | 100 |
| MIMAT0013118 | eca-miR-544b | 1 | ....... | 7 | 100 |
| MIMAT0012831 | rno-miR-544-3p | 1 | ....... | 7 | 100 |
| MIMAT0011835 | bta-miR-2315 | 8 | ....... | 2 | 100 |
| MIMAT0009910 | cfa-miR-544 | 1 | ....... | 7 | 100 |
| MIMAT0009346 | bta-miR-544a | 1 | ....... | 7 | 100 |
| MIMAT0009345 | bta-miR-544b | 1 | ....... | 7 | 100 |
| MIMAT0008216 | ptr-miR-544 | 1 | ....... | 7 | 100 |
| MIMAT0006408 | mml-miR-544 | 1 | ....... | 7 | 100 |
| MIMAT0007725 | gga-miR-1807 | 7 | ....... | 1 | 100 |
| MIMAT0004941 | mmu-miR-544-3p | 1 | ....... | 7 | 100 |
| MIMAT0003164 | hsa-miR-544a | 1 | ....... | 7 | 100 |
| MIMAT0036346 | gma-miR9728 | 7 | _...... | 2 | 85 |
| MIMAT0035745 | rno-miR-3084d | 1 | _...... | 6 | 85 |
| MIMAT0035742 | rno-miR-3084b-3p | 1 | _...... | 6 | 85 |
| MIMAT0035740 | rno-miR-3084a-3p | 1 | _...... | 6 | 85 |
| MIMAT0034980 | efu-miR-9307 | 1 | _...... | 6 | 85 |
| MIMAT0033647 | sma-miR-8464-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033287 | ppc-miR-84f-3p | 1 | ......_ | 6 | 85 |
| MIMAT0031597 | bbe-miR-182b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030010 | mtr-miR2592bp-3p | 8 | _...... | 3 | 85 |
| MIMAT0028570 | mdo-miR-7293-5p | 7 | _...... | 2 | 85 |
| MIMAT0028538 | mdo-miR-7282-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027745 | mmu-miR-6922-3p | 3 | _...... | 8 | 85 |
| MIMAT0027698 | mmu-miR-6899-5p | 7 | _...... | 2 | 85 |
| MIMAT0027378 | hsa-miR-6738-3p | 2 | _...... | 7 | 85 |
| MIMAT0025753 | gga-miR-3524b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025593 | gga-miR-6545-5p | 7 | _...... | 2 | 85 |
| MIMAT0025410 | tgu-miR-2131 | 8 | _...... | 3 | 85 |
| MIMAT0025258 | ptc-miR6439b | 7 | _...... | 2 | 85 |
| MIMAT0025202 | ptc-miR6469 | 8 | _...... | 3 | 85 |
| MIMAT0023696 | hsa-miR-6071 | 1 | _...... | 6 | 85 |
| MIMAT0022153 | osa-miR5519 | 8 | _...... | 3 | 85 |
| MIMAT0022130 | osa-miR5497 | 6 | ......_ | 1 | 85 |
| MIMAT0021310 | mtr-miR2629h | 6 | _...... | 1 | 85 |
| MIMAT0021022 | hsa-miR-5001-3p | 1 | _...... | 6 | 85 |
| MIMAT0020153 | dme-miR-4944-5p | 2 | _...... | 7 | 85 |
| MIMAT0020081 | bfl-miR-182b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0018761 | tca-miR-3852-3p | 3 | _...... | 8 | 85 |
| MIMAT0016654 | cin-miR-4082-3p | 1 | ......_ | 6 | 85 |
| MIMAT0016374 | gga-miR-3524a | 6 | ......_ | 1 | 85 |
| MIMAT0015812 | ppy-miR-298 | 7 | _...... | 2 | 85 |
| MIMAT0014951 | mmu-miR-3110-5p | 1 | _...... | 6 | 85 |
| MIMAT0014918 | mmu-miR-3098-3p | 1 | _...... | 6 | 85 |
| MIMAT0014877 | mmu-miR-3084-3p | 1 | _...... | 6 | 85 |
| MIMAT0014784 | api-miR-3045a | 6 | ......_ | 1 | 85 |
| MIMAT0026960 | tgu-miR-1784-5p | 1 | _...... | 6 | 85 |
| MIMAT0012051 | bta-miR-2464-5p | 3 | _...... | 8 | 85 |
| MIMAT0011617 | crm-miR-239a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0011551 | crm-miR-55-5p | 8 | _...... | 3 | 85 |
| MIMAT0011207 | gga-miR-2131-5p | 8 | _...... | 3 | 85 |
| MIMAT0019127 | tca-miR-283-3p | 6 | ......_ | 1 | 85 |
| MIMAT0008081 | ptr-miR-298 | 7 | _...... | 2 | 85 |
| MIMAT0007874 | mmu-miR-1904 | 2 | _...... | 7 | 85 |
| MIMAT0006254 | mml-miR-298 | 7 | _...... | 2 | 85 |
| MIMAT0006244 | mml-miR-217a | 1 | _...... | 6 | 85 |
| MIMAT0007708 | gga-miR-1794 | 8 | ......_ | 3 | 85 |
| MIMAT0007696 | gga-miR-1784-5p | 1 | _...... | 6 | 85 |
| MIMAT0007433 | gga-miR-1573 | 3 | _...... | 8 | 85 |
| MIMAT0006009 | ptc-miR1447 | 6 | ......_ | 1 | 85 |
| MIMAT0004389 | cre-miR907 | 3 | _...... | 8 | 85 |
| MIMAT0004901 | hsa-miR-298 | 7 | _...... | 2 | 85 |
| MIMAT0003938 | ath-miR779.1 | 1 | _...... | 6 | 85 |
| MIMAT0019085 | rlcv-miR-rL1-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000996 | ebv-miR-BHRF1-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020313 | cel-miR-55-5p | 8 | _...... | 3 | 85 |
