Result for your query miRNA sequence
>tumv-miR-s53
auugagga

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1attgagga8
MIMAT0034485eca-miR-89551_.......787
MIMAT0033167ppc-miR-8315-5p8_.......287
MIMAT0019778hsa-miR-46891_.......787
MIMAT0018189hsa-miR-39151_.......787
MIMAT0018703tca-miR-3835-3p1_.......787
MIMAT0017785esi-miR3456-5p1_.......787
MIMAT0017715aly-miR3441-3p.18......._287
MIMAT0020795dme-miR-13a-5p8_.......287
MIMAT0035234dme-miR-9385-3p8.a......187
MIMAT0032679ssa-miR-730a-5p8.a......187
MIMAT0029524ipu-miR-7308.a......187
MIMAT0028497mdo-miR-7264-3p8......a.187
MIMAT0026317ccr-miR-7308.a......187
MIMAT0009165osa-miR1846c-5p1.g......887
MIMAT0007790osa-miR1846b-5p1.g......887
MIMAT0007788osa-miR1846a-5p1.g......887
MIMAT0007326gga-miR-460b-5p8.a......187
MIMAT0003760dre-miR-7308.a......187
MIMAT0037305vvi-miR171j3......__875
MIMAT0037251ata-miR171b-3p3......__875
MIMAT0037229ata-miR171d-3p3......__875
MIMAT0035919chi-miR-12242__......775
MIMAT0035620dvi-miR-9539-5p3......__875
MIMAT0035518bdi-miR171e3......__875
MIMAT0035065efu-miR-93261__......675
MIMAT0034943efu-let-7c2_......_775
MIMAT0034866efu-miR-92491__......675
MIMAT0034724eca-miR-91481__......675
MIMAT0034714eca-miR-21148_......_375
MIMAT0034441eca-miR-89137__......275
MIMAT0034295cfa-miR-88051__......675
MIMAT0034286cfa-miR-87961......__675
MIMAT0033944atr-miR397b3......__875
MIMAT0033926atr-miR171c3......__875
MIMAT0033924atr-miR171a3......__875
MIMAT0033800pxy-miR-85413......__875
MIMAT0033563sma-miR-8429-3p2......__775
MIMAT0032860ppc-miR-8215a-5p7__......275
MIMAT0032676ssa-miR-727-3p2_......_775
MIMAT0031857lus-miR171j3......__875
MIMAT0031809cpa-miR171d3......__875
MIMAT0031808cpa-miR171c3......__875
MIMAT0031807cpa-miR171b3......__875
MIMAT0031806cpa-miR171a3......__875
MIMAT0031496ppe-miR3973......__875
MIMAT0031345stu-miR171e3......__875
MIMAT0031341stu-miR397-5p1......__675
MIMAT0031259stu-miR171c-3p3......__875
MIMAT0031257stu-miR171a-3p3......__875
MIMAT0030676prd-miR-7918f-5p1......__675
MIMAT0030674prd-miR-7918e-5p1......__675
MIMAT0030551prd-miR-7889-3p1__......675
MIMAT0030156bdi-miR7717a-5p3......__875
MIMAT0030065bdi-miR397b-5p1......__675
MIMAT0029984mtr-miR397-5p3......__875
MIMAT0029650cbn-miR-75791__......675
MIMAT0029610crm-miR-75791__......675
MIMAT0029580cbr-miR-75791__......675
MIMAT0029326lja-miR3972......__775
MIMAT0029315lja-miR171b3......__875
MIMAT0029314lja-miR171a3......__875
MIMAT0029247mes-miR171k3......__875
MIMAT0029246mes-miR171j3......__875
MIMAT0029245mes-miR171i3......__875
MIMAT0029244mes-miR171h3......__875
MIMAT0029243mes-miR171g3......__875
MIMAT0029242mes-miR171f3......__875
MIMAT0029241mes-miR171e3......__875
MIMAT0029137ghr-miR1603__......875
MIMAT0029036gga-miR-7441-5p2__......775
MIMAT0028594mdo-miR-1643a-5p7__......275
MIMAT0028395mmu-miR-7213-3p8_......_375
MIMAT0028226hsa-miR-7158-5p8......__375
MIMAT0026448sbi-miR6233-5p3_......_875
MIMAT0026332ccr-miR-71321__......675
MIMAT0026315ccr-miR-727-3p2_......_775
MIMAT0026173cme-miR171h3......__875
MIMAT0026166cme-miR171f3......__875
MIMAT0026154cme-miR171c3......__875
MIMAT0026148cme-miR3973......__875
MIMAT0026120cme-miR171g3......__875
MIMAT0026119cme-miR171a3......__875
MIMAT0026118cme-miR171e3......__875
MIMAT0026100cme-miR8543__......875
MIMAT0025945mdm-miR171h3......__875
MIMAT0025944mdm-miR171g3......__875
MIMAT0025942mdm-miR171e3......__875
MIMAT0025941mdm-miR171d3......__875
MIMAT0025940mdm-miR171c3......__875
MIMAT0028101ddi-miR-70988......__375
MIMAT0027864mmu-miR-6981-5p2__......775
MIMAT0027750mmu-miR-6925-5p1__......675
MIMAT0027704mmu-miR-6902-5p7__......275
MIMAT0027616hsa-miR-6858-5p2__......775
MIMAT0027369hsa-miR-6734-5p1_......_675
MIMAT0025508htu-miR171c3......__875
MIMAT0025507htu-miR171b3......__875
MIMAT0025506htu-miR171a3......__875
MIMAT0025505hpa-miR171a3......__875
MIMAT0025400tgu-miR-16411__......675
MIMAT0025330pde-miR1713......__875
MIMAT0027323ppe-miR171c3......__875
MIMAT0027304ppe-miR171g3......__875
MIMAT0031171ppe-miR477b-5p8_......_375
MIMAT0031170ppe-miR477a-5p8_......_375
MIMAT0027286ppe-miR171a3......__875
MIMAT0027274ppe-miR171f3......__875
MIMAT0024711nta-miR3971......__675
MIMAT0024688nta-miR171c3......__875
MIMAT0027193lus-miR171g3......__875
MIMAT0027181lus-miR397b3......__875
MIMAT0027170lus-miR397a1......__675
MIMAT0027163lus-miR171f3......__875
MIMAT0027149lus-miR171e3......__875
MIMAT0027140lus-miR171c3......__875
MIMAT0027134lus-miR171b3......__875
MIMAT0027122lus-miR171a3......__875
MIMAT0024520cca-miR1713......__875
MIMAT0024415mes-miR171a3......__875
MIMAT0024236ggo-miR-36053__......875
MIMAT0023697hsa-miR-60726__......175
MIMAT0023537dpr-miR3973......__875
MIMAT0023261osa-miR57941__......675
MIMAT0023240gma-miR171u3......__875
MIMAT0023163gma-miR57661_......_675
MIMAT0022518ssl-miR3973......__875
MIMAT0022157osa-miR55231__......675
MIMAT0022047aca-miR-5426-3p1__......675
MIMAT0021988aca-miR-727-3p2_......_775
MIMAT0021628gma-miR397b-5p3......__875
MIMAT0021627gma-miR397a3......__875
MIMAT0022990gma-miR171j-3p3......__875
MIMAT0027059bdi-miR160e-3p3......__875
MIMAT0020665bdi-miR171d-3p3......__875
MIMAT0020659bdi-miR171b3......__875
MIMAT0021089osa-miR5144-3p8__......375
MIMAT0020546hvu-miR50501_......_675
MIMAT0021060gma-miR5037a7_......_275
MIMAT0021054gma-miR171h1......__675
MIMAT0021027hsa-miR-5004-5p1__......675
MIMAT0020991gma-miR171g3......__875
MIMAT0020990gma-miR171f3......__875
MIMAT0020989gma-miR171e3......__875
MIMAT0020988gma-miR171d3......__875
MIMAT0020251egr-miR-49908__......375
MIMAT0020432tcc-miR3973......__875
MIMAT0020412tcc-miR171h3......__875
MIMAT0020411tcc-miR171g3......__875
MIMAT0020410tcc-miR171f3......__875
MIMAT0020409tcc-miR171e3......__875
MIMAT0020408tcc-miR171d3......__875
MIMAT0020407tcc-miR171c3......__875
MIMAT0020406tcc-miR171b3......__875
MIMAT0020405tcc-miR171a3......__875
MIMAT0019948hsa-miR-47841__......675
MIMAT0018983hsa-miR-44612......__775
MIMAT0018465csi-miR3973......__875
MIMAT0018364far-miR1713......__875
MIMAT0018220hvu-miR171-3p3......__875
MIMAT0018194hsa-miR-3150b-3p1__......675
MIMAT0018892tca-miR-3895-5p1......__675
MIMAT0018155pab-miR3973......__875
MIMAT0018104hsa-miR-3679-5p1__......675
MIMAT0017981hsa-miR-3605-5p1__......675
MIMAT0018504ath-miR854e3__......875
MIMAT0016723cin-miR-4128-3p2_......_775
MIMAT0016420cin-miR-4220-3p8......__375
MIMAT0016158ppy-miR-1224-5p2__......775
MIMAT0017732aly-miR3448-3p3__......875
MIMAT0017563aly-miR397b-5p3......__875
MIMAT0017561aly-miR397a-5p3......__875
MIMAT0017516aly-miR171a-3p3......__875
MIMAT0017514aly-miR170-3p3......__875
MIMAT0014833mmu-miR-3063-3p1__......675
MIMAT0014422cqu-miR-18911__......675
MIMAT0014263aae-miR-18911__......675
MIMAT0014193rco-miR3973......__875
MIMAT0014178rco-miR171g3......__875
MIMAT0014177rco-miR171f3......__875
MIMAT0014176rco-miR171e3......__875
MIMAT0014175rco-miR171d3......__875
MIMAT0014174rco-miR171c3......__875
MIMAT0014087crt-miR1713......__875
MIMAT0014075ccl-miR1713......__875
MIMAT0014019zma-miR397b-5p3......__875
MIMAT0014018zma-miR397a-5p3......__875
MIMAT0013997zma-miR171n-3p3......__875
MIMAT0013996zma-miR171m-3p3......__875
MIMAT0013995zma-miR171l-3p3......__875
MIMAT0012998eca-miR-15971__......675
MIMAT0012827rno-miR-12242__......775
MIMAT0026954mml-miR-670-3p8__......375
MIMAT0012569aqc-miR171d3......__875
MIMAT0012567aqc-miR171b3......__875
MIMAT0012566aqc-miR171a3......__875
MIMAT0012565aqc-miR171f3......__875
MIMAT0013319mtr-miR2610b3......__875
MIMAT0013318mtr-miR2610a3......__875
MIMAT0012186bdi-miR171c-3p3......__875
MIMAT0012180bdi-miR397a3......__875
MIMAT0012174bdi-miR171a3......__875
MIMAT0012034bta-miR-24536__......175
MIMAT0011989bta-miR-24221_......_675
MIMAT0011851bta-miR-2322-3p2__......775
MIMAT0011809bta-miR-2300a-5p6__......175
MIMAT0011493cbr-miR-22241_......_675
MIMAT0011359sbi-miR397-5p3......__875
MIMAT0011344sbi-miR171k3......__875
MIMAT0011343sbi-miR171j3......__875
MIMAT0011342sbi-miR171i3......__875
MIMAT0011341sbi-miR171h3......__875
MIMAT0011340sbi-miR171g3......__875
MIMAT0010165bra-miR171e3......__875
MIMAT0009944bta-miR-12242__......775
MIMAT0009440mmu-miR-19671__......675
MIMAT0007928sly-miR3971......__675
MIMAT0007922sly-miR171a3......__875
MIMAT0007862aga-miR-18911__......675
MIMAT0006561vvi-miR397a3......__875
MIMAT0026858mml-miR-372-5p6_......_175
MIMAT0007657gga-miR-17501__......675
MIMAT0007576gga-miR-1687-5p1__......675
MIMAT0007555gga-miR-16712__......775
MIMAT0007516gga-miR-16411__......675
MIMAT0007463gga-miR-1597-3p1__......675
MIMAT0005698vvi-miR171i3......__875
MIMAT0005695vvi-miR171e3......__875
MIMAT0005694vvi-miR171d3......__875
MIMAT0005693vvi-miR171c3......__875
MIMAT0005692vvi-miR171b3......__875
MIMAT0005691vvi-miR171a3......__875
MIMAT0005610bna-miR171f3......__875
MIMAT0005601bna-miR397b3......__875
MIMAT0005600bna-miR397a3......__875
MIMAT0005892hsa-miR-1304-5p2_......_775
MIMAT0005570mml-miR-1224-5p2__......775
MIMAT0005568ptr-miR-1224-5p2__......775
MIMAT0005348tae-miR171a3......__875
MIMAT0005068ppt-miR537d1_......_675
MIMAT0005067ppt-miR537c1_......_675
MIMAT0004996pta-miR1713......__875
MIMAT0004446bna-miR171g3......__875
MIMAT0004362ppt-miR477g-5p8_......_375
MIMAT0004361ppt-miR477f8_......_375
MIMAT0011106mtr-miR171e-3p3......__875
MIMAT0011105mtr-miR171d3......__875
MIMAT0011083mtr-miR171c3......__875
MIMAT0011066mtr-miR171b3......__875
MIMAT0004867mmu-miR-3273_......_875
MIMAT0004283ath-miR854d3__......875
MIMAT0004282ath-miR854c3__......875
MIMAT0004281ath-miR854b3__......875
MIMAT0004280ath-miR854a3__......875
MIMAT0003943ptc-miR171k3......__875
MIMAT0003756dre-miR-727-3p2_......_775
MIMAT0017242mmu-miR-670-3p8__......375
MIMAT0005460mmu-miR-1224-5p2__......775
MIMAT0026640hsa-miR-670-3p8__......375
MIMAT0005458hsa-miR-1224-5p2__......775
MIMAT0003146ppt-miR537b1_......_675
MIMAT0003145ppt-miR537a1_......_675
MIMAT0002039ptc-miR397b3......__875
MIMAT0002038ptc-miR397a3......__875
MIMAT0001991ptc-miR171i3......__875
MIMAT0001990ptc-miR171h-3p3......__875
MIMAT0001989ptc-miR171g-3p3......__875
MIMAT0001988ptc-miR171f3......__875
MIMAT0001987ptc-miR171e3......__875
MIMAT0001986ptc-miR171d3......__875
MIMAT0001985ptc-miR171c3......__875
MIMAT0001740zma-miR171i-3p3......__875
MIMAT0001739zma-miR171e-3p3......__875
MIMAT0001738zma-miR171j-3p3......__875
MIMAT0001694zma-miR171d-3p3......__875
MIMAT0001655mtr-miR171a3......__875
MIMAT0001462sbi-miR171a3......__875
MIMAT0001461sbi-miR171d3......__875
MIMAT0001460sbi-miR171b3......__875
MIMAT0001385zma-miR171a-3p3......__875
MIMAT0001085osa-miR171i-3p3......__875
MIMAT0001067osa-miR171f-3p3......__875
MIMAT0001066osa-miR171e-3p3......__875
MIMAT0001065osa-miR171d-3p3......__875
MIMAT0001064osa-miR171c-3p3......__875
MIMAT0001063osa-miR171b3......__875
MIMAT0020916osa-miR169f.21__......675
MIMAT0022868osa-miR160f-3p3......__875
MIMAT0000981osa-miR397b3......__875
MIMAT0000980osa-miR397a3......__875
MIMAT0000947ath-miR397b3......__875
MIMAT0000946ath-miR397a3......__875
MIMAT0026484hsa-miR-372-5p6_......_175
MIMAT0000645osa-miR171a3......__875
MIMAT0000561rno-miR-3273_......_875
MIMAT0000202ath-miR171a-3p3......__875
MIMAT0000201ath-miR170-3p3......__875